Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2449 and Shewana3_2450 overlap by 1 nucleotides Shewana3_2450 and Shewana3_2451 are separated by 144 nucleotides Shewana3_2451 and Shewana3_2452 are separated by 259 nucleotides
Shewana3_2449: Shewana3_2449 - hypothetical protein (RefSeq), at 2,937,793 to 2,938,533
_2449
Shewana3_2450: Shewana3_2450 - hypothetical protein (RefSeq), at 2,938,533 to 2,939,372
_2450
Shewana3_2451: Shewana3_2451 - hypothetical protein (RefSeq), at 2,939,517 to 2,939,948
_2451
Shewana3_2452: Shewana3_2452 - dihydrouridine synthase, DuS (RefSeq), at 2,940,208 to 2,941,155
_2452
Position (kb)
2938
2939
2940 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2937.644 kb on + strand at 2937.644 kb on + strand at 2937.652 kb on - strand at 2938.097 kb on - strand, within Shewana3_2449 at 2938.169 kb on - strand, within Shewana3_2449 at 2938.199 kb on + strand, within Shewana3_2449 at 2938.405 kb on + strand, within Shewana3_2449 at 2938.473 kb on - strand at 2938.644 kb on - strand, within Shewana3_2450 at 2938.677 kb on - strand, within Shewana3_2450 at 2938.677 kb on - strand, within Shewana3_2450 at 2938.799 kb on + strand, within Shewana3_2450 at 2939.162 kb on + strand, within Shewana3_2450 at 2939.191 kb on - strand, within Shewana3_2450 at 2939.345 kb on - strand at 2939.374 kb on + strand at 2939.491 kb on - strand at 2939.589 kb on + strand, within Shewana3_2451 at 2939.731 kb on + strand, within Shewana3_2451 at 2939.811 kb on - strand, within Shewana3_2451 at 2939.900 kb on + strand, within Shewana3_2451 at 2940.044 kb on + strand at 2940.364 kb on - strand, within Shewana3_2452
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,937,644 + +3.2 2,937,644 + -0.5 2,937,652 - -1.1 2,938,097 - Shewana3_2449 0.41 -1.0 2,938,169 - Shewana3_2449 0.51 +0.2 2,938,199 + Shewana3_2449 0.55 +1.2 2,938,405 + Shewana3_2449 0.83 +0.9 2,938,473 - +2.2 2,938,644 - Shewana3_2450 0.13 +0.7 2,938,677 - Shewana3_2450 0.17 -0.4 2,938,677 - Shewana3_2450 0.17 +0.3 2,938,799 + Shewana3_2450 0.32 +1.2 2,939,162 + Shewana3_2450 0.75 +2.3 2,939,191 - Shewana3_2450 0.78 -0.6 2,939,345 - -1.1 2,939,374 + +0.6 2,939,491 - -0.5 2,939,589 + Shewana3_2451 0.17 +1.4 2,939,731 + Shewana3_2451 0.50 +1.9 2,939,811 - Shewana3_2451 0.68 +1.1 2,939,900 + Shewana3_2451 0.89 -0.5 2,940,044 + +3.2 2,940,364 - Shewana3_2452 0.16 +0.4
Or see this region's nucleotide sequence