Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2450

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2449 and Shewana3_2450 overlap by 1 nucleotidesShewana3_2450 and Shewana3_2451 are separated by 144 nucleotidesShewana3_2451 and Shewana3_2452 are separated by 259 nucleotides Shewana3_2449: Shewana3_2449 - hypothetical protein (RefSeq), at 2,937,793 to 2,938,533 _2449 Shewana3_2450: Shewana3_2450 - hypothetical protein (RefSeq), at 2,938,533 to 2,939,372 _2450 Shewana3_2451: Shewana3_2451 - hypothetical protein (RefSeq), at 2,939,517 to 2,939,948 _2451 Shewana3_2452: Shewana3_2452 - dihydrouridine synthase, DuS (RefSeq), at 2,940,208 to 2,941,155 _2452 Position (kb) 2938 2939 2940Strain fitness (log2 ratio) -1 0 1 2 3at 2937.644 kb on + strandat 2937.644 kb on + strandat 2937.652 kb on - strandat 2938.097 kb on - strand, within Shewana3_2449at 2938.169 kb on - strand, within Shewana3_2449at 2938.199 kb on + strand, within Shewana3_2449at 2938.405 kb on + strand, within Shewana3_2449at 2938.473 kb on - strandat 2938.644 kb on - strand, within Shewana3_2450at 2938.677 kb on - strand, within Shewana3_2450at 2938.677 kb on - strand, within Shewana3_2450at 2938.799 kb on + strand, within Shewana3_2450at 2939.162 kb on + strand, within Shewana3_2450at 2939.191 kb on - strand, within Shewana3_2450at 2939.345 kb on - strandat 2939.374 kb on + strandat 2939.491 kb on - strandat 2939.589 kb on + strand, within Shewana3_2451at 2939.731 kb on + strand, within Shewana3_2451at 2939.811 kb on - strand, within Shewana3_2451at 2939.900 kb on + strand, within Shewana3_2451at 2940.044 kb on + strandat 2940.364 kb on - strand, within Shewana3_2452

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,937,644 + +3.2
2,937,644 + -0.5
2,937,652 - -1.1
2,938,097 - Shewana3_2449 0.41 -1.0
2,938,169 - Shewana3_2449 0.51 +0.2
2,938,199 + Shewana3_2449 0.55 +1.2
2,938,405 + Shewana3_2449 0.83 +0.9
2,938,473 - +2.2
2,938,644 - Shewana3_2450 0.13 +0.7
2,938,677 - Shewana3_2450 0.17 -0.4
2,938,677 - Shewana3_2450 0.17 +0.3
2,938,799 + Shewana3_2450 0.32 +1.2
2,939,162 + Shewana3_2450 0.75 +2.3
2,939,191 - Shewana3_2450 0.78 -0.6
2,939,345 - -1.1
2,939,374 + +0.6
2,939,491 - -0.5
2,939,589 + Shewana3_2451 0.17 +1.4
2,939,731 + Shewana3_2451 0.50 +1.9
2,939,811 - Shewana3_2451 0.68 +1.1
2,939,900 + Shewana3_2451 0.89 -0.5
2,940,044 + +3.2
2,940,364 - Shewana3_2452 0.16 +0.4

Or see this region's nucleotide sequence