Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2445

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2443 and recR are separated by 317 nucleotidesrecR and Shewana3_2445 are separated by 12 nucleotidesShewana3_2445 and Shewana3_2446 are separated by 163 nucleotides Shewana3_2443: Shewana3_2443 - heat shock protein 90 (RefSeq), at 2,929,409 to 2,931,322 _2443 Shewana3_2444: recR - recombination protein RecR (RefSeq), at 2,931,640 to 2,932,239 recR Shewana3_2445: Shewana3_2445 - hypothetical protein (RefSeq), at 2,932,252 to 2,932,587 _2445 Shewana3_2446: Shewana3_2446 - DNA polymerase III, subunits gamma and tau (RefSeq), at 2,932,751 to 2,935,873 _2446 Position (kb) 2932 2933Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2931.491 kb on + strandat 2931.534 kb on + strandat 2931.548 kb on + strandat 2931.548 kb on + strandat 2931.556 kb on - strandat 2931.667 kb on - strandat 2931.669 kb on + strandat 2931.669 kb on + strandat 2931.672 kb on - strandat 2931.677 kb on - strandat 2931.784 kb on + strand, within recRat 2931.876 kb on - strand, within recRat 2931.884 kb on - strand, within recRat 2931.884 kb on - strand, within recRat 2931.884 kb on - strand, within recRat 2932.062 kb on - strand, within recRat 2932.099 kb on - strand, within recRat 2932.099 kb on - strand, within recRat 2932.206 kb on + strandat 2932.356 kb on - strand, within Shewana3_2445at 2932.623 kb on - strandat 2932.623 kb on - strandat 2932.731 kb on + strandat 2932.758 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,931,491 + -0.5
2,931,534 + +1.3
2,931,548 + +0.4
2,931,548 + +0.2
2,931,556 - +1.2
2,931,667 - -0.2
2,931,669 + +2.2
2,931,669 + +0.6
2,931,672 - -1.0
2,931,677 - -0.3
2,931,784 + recR Shewana3_2444 0.24 +1.6
2,931,876 - recR Shewana3_2444 0.39 -0.8
2,931,884 - recR Shewana3_2444 0.41 +0.2
2,931,884 - recR Shewana3_2444 0.41 -1.3
2,931,884 - recR Shewana3_2444 0.41 -1.7
2,932,062 - recR Shewana3_2444 0.70 +0.3
2,932,099 - recR Shewana3_2444 0.77 -2.1
2,932,099 - recR Shewana3_2444 0.77 -0.6
2,932,206 + +3.2
2,932,356 - Shewana3_2445 0.31 -1.2
2,932,623 - -0.1
2,932,623 - +2.2
2,932,731 + -1.4
2,932,758 + +0.0

Or see this region's nucleotide sequence