Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2439
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,925,004 | + | +2.2 | |||
2,925,009 | + | +1.6 | |||
2,925,017 | - | -0.5 | |||
2,925,042 | + | +0.4 | |||
2,925,160 | - | Shewana3_2439 | 0.11 | -1.9 | |
2,925,263 | + | Shewana3_2439 | 0.18 | +0.9 | |
2,925,405 | - | Shewana3_2439 | 0.29 | -0.3 | |
2,925,405 | - | Shewana3_2439 | 0.29 | -0.5 | |
2,925,413 | - | Shewana3_2439 | 0.30 | -0.9 | |
2,925,649 | + | Shewana3_2439 | 0.48 | -0.1 | |
2,925,803 | - | Shewana3_2439 | 0.60 | -1.2 | |
2,926,041 | + | Shewana3_2439 | 0.78 | +0.0 | |
2,926,234 | + | -0.3 | |||
2,926,234 | + | -0.1 | |||
2,926,872 | + | hemH | Shewana3_2440 | 0.34 | +2.2 |
2,926,877 | + | hemH | Shewana3_2440 | 0.34 | +0.7 |
2,926,877 | + | hemH | Shewana3_2440 | 0.34 | +0.6 |
2,926,877 | + | hemH | Shewana3_2440 | 0.34 | +1.4 |
2,926,880 | - | hemH | Shewana3_2440 | 0.35 | +0.7 |
2,926,885 | - | hemH | Shewana3_2440 | 0.35 | +1.6 |
2,927,034 | + | hemH | Shewana3_2440 | 0.49 | -1.2 |
2,927,140 | + | hemH | Shewana3_2440 | 0.60 | +0.6 |
2,927,296 | + | hemH | Shewana3_2440 | 0.74 | -0.1 |
Or see this region's nucleotide sequence