Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2391 and Shewana3_2392 are separated by 376 nucleotides Shewana3_2392 and Shewana3_2393 are separated by 95 nucleotides
Shewana3_2391: Shewana3_2391 - peptidase M22, glycoprotease (RefSeq), at 2,869,767 to 2,870,477
_2391
Shewana3_2392: Shewana3_2392 - delta-aminolevulinic acid dehydratase (RefSeq), at 2,870,854 to 2,871,852
_2392
Shewana3_2393: Shewana3_2393 - bifunctional methionine sulfoxide reductase B/A protein (RefSeq), at 2,871,948 to 2,872,853
_2393
Position (kb)
2870
2871
2872 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2870.536 kb on - strand at 2870.541 kb on - strand at 2870.662 kb on + strand at 2871.133 kb on + strand, within Shewana3_2392 at 2871.171 kb on - strand, within Shewana3_2392 at 2871.251 kb on + strand, within Shewana3_2392 at 2871.276 kb on - strand, within Shewana3_2392 at 2871.350 kb on - strand, within Shewana3_2392 at 2871.395 kb on - strand, within Shewana3_2392 at 2871.395 kb on - strand, within Shewana3_2392 at 2871.527 kb on - strand, within Shewana3_2392 at 2871.527 kb on - strand, within Shewana3_2392 at 2871.940 kb on + strand at 2871.948 kb on - strand at 2872.119 kb on - strand, within Shewana3_2393 at 2872.416 kb on - strand, within Shewana3_2393 at 2872.462 kb on - strand, within Shewana3_2393 at 2872.614 kb on - strand, within Shewana3_2393 at 2872.774 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,870,536 - +4.1 2,870,541 - -1.5 2,870,662 + +0.1 2,871,133 + Shewana3_2392 0.28 -0.2 2,871,171 - Shewana3_2392 0.32 +3.2 2,871,251 + Shewana3_2392 0.40 -1.1 2,871,276 - Shewana3_2392 0.42 +0.5 2,871,350 - Shewana3_2392 0.50 +1.6 2,871,395 - Shewana3_2392 0.54 +0.5 2,871,395 - Shewana3_2392 0.54 -0.8 2,871,527 - Shewana3_2392 0.67 -0.1 2,871,527 - Shewana3_2392 0.67 +0.6 2,871,940 + -1.8 2,871,948 - +0.2 2,872,119 - Shewana3_2393 0.19 +0.0 2,872,416 - Shewana3_2393 0.52 -0.4 2,872,462 - Shewana3_2393 0.57 +0.8 2,872,614 - Shewana3_2393 0.74 -1.6 2,872,774 + -1.2
Or see this region's nucleotide sequence