Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2388 and Shewana3_2389 are separated by 130 nucleotides Shewana3_2389 and Shewana3_2390 overlap by 8 nucleotides Shewana3_2390 and Shewana3_2391 are separated by 142 nucleotides
Shewana3_2388: Shewana3_2388 - hypothetical protein (RefSeq), at 2,867,673 to 2,868,485
_2388
Shewana3_2389: Shewana3_2389 - hypothetical protein (RefSeq), at 2,868,616 to 2,869,323
_2389
Shewana3_2390: Shewana3_2390 - hypothetical protein (RefSeq), at 2,869,316 to 2,869,624
_2390
Shewana3_2391: Shewana3_2391 - peptidase M22, glycoprotease (RefSeq), at 2,869,767 to 2,870,477
_2391
Position (kb)
2869
2870 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2868.400 kb on + strand, within Shewana3_2388 at 2868.426 kb on + strand at 2868.434 kb on - strand at 2868.434 kb on - strand at 2868.434 kb on - strand at 2868.804 kb on + strand, within Shewana3_2389 at 2868.872 kb on + strand, within Shewana3_2389 at 2868.919 kb on + strand, within Shewana3_2389 at 2868.927 kb on - strand, within Shewana3_2389 at 2869.063 kb on + strand, within Shewana3_2389 at 2869.149 kb on + strand, within Shewana3_2389 at 2869.400 kb on + strand, within Shewana3_2390 at 2869.472 kb on + strand, within Shewana3_2390 at 2869.653 kb on - strand at 2870.536 kb on - strand at 2870.541 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,868,400 + Shewana3_2388 0.89 +3.2 2,868,426 + +3.2 2,868,434 - +1.8 2,868,434 - -1.1 2,868,434 - -0.6 2,868,804 + Shewana3_2389 0.27 -0.8 2,868,872 + Shewana3_2389 0.36 -0.1 2,868,919 + Shewana3_2389 0.43 +0.3 2,868,927 - Shewana3_2389 0.44 +2.0 2,869,063 + Shewana3_2389 0.63 +1.3 2,869,149 + Shewana3_2389 0.75 +0.5 2,869,400 + Shewana3_2390 0.27 -1.0 2,869,472 + Shewana3_2390 0.50 -1.4 2,869,653 - -0.1 2,870,536 - +4.1 2,870,541 - -1.5
Or see this region's nucleotide sequence