Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2250 and Shewana3_2251 are separated by 119 nucleotides Shewana3_2251 and Shewana3_2252 are separated by 104 nucleotides Shewana3_2252 and Shewana3_2253 are separated by 218 nucleotides
Shewana3_2250: Shewana3_2250 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 2,711,588 to 2,712,895
_2250
Shewana3_2251: Shewana3_2251 - DNA polymerase III, epsilon subunit (RefSeq), at 2,713,015 to 2,713,704
_2251
Shewana3_2252: Shewana3_2252 - LacI family transcription regulator (RefSeq), at 2,713,809 to 2,714,849
_2252
Shewana3_2253: Shewana3_2253 - hypothetical protein (RefSeq), at 2,715,068 to 2,715,784
_2253
Position (kb)
2713
2714
2715 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2713.259 kb on + strand, within Shewana3_2251 at 2713.301 kb on + strand, within Shewana3_2251 at 2713.568 kb on + strand, within Shewana3_2251 at 2713.709 kb on + strand at 2714.166 kb on - strand, within Shewana3_2252 at 2714.454 kb on + strand, within Shewana3_2252 at 2714.651 kb on - strand, within Shewana3_2252 at 2715.074 kb on + strand at 2715.120 kb on + strand at 2715.163 kb on - strand, within Shewana3_2253 at 2715.183 kb on + strand, within Shewana3_2253 at 2715.183 kb on + strand, within Shewana3_2253 at 2715.321 kb on - strand, within Shewana3_2253 at 2715.658 kb on + strand, within Shewana3_2253 at 2715.658 kb on + strand, within Shewana3_2253 at 2715.658 kb on + strand, within Shewana3_2253
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,713,259 + Shewana3_2251 0.35 +1.2 2,713,301 + Shewana3_2251 0.41 +0.4 2,713,568 + Shewana3_2251 0.80 +0.7 2,713,709 + +0.0 2,714,166 - Shewana3_2252 0.34 -1.4 2,714,454 + Shewana3_2252 0.62 +1.4 2,714,651 - Shewana3_2252 0.81 -1.7 2,715,074 + +1.6 2,715,120 + +3.0 2,715,163 - Shewana3_2253 0.13 +1.3 2,715,183 + Shewana3_2253 0.16 +0.2 2,715,183 + Shewana3_2253 0.16 -0.6 2,715,321 - Shewana3_2253 0.35 +1.4 2,715,658 + Shewana3_2253 0.82 -1.0 2,715,658 + Shewana3_2253 0.82 +2.0 2,715,658 + Shewana3_2253 0.82 -0.5
Or see this region's nucleotide sequence