Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2238

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2237 and Shewana3_2238 are separated by 820 nucleotidesShewana3_2238 and Shewana3_2239 are separated by 126 nucleotidesShewana3_2239 and Shewana3_2240 are separated by 75 nucleotides Shewana3_2237: Shewana3_2237 - diguanylate phosphodiesterase (RefSeq), at 2,691,076 to 2,691,777 _2237 Shewana3_2238: Shewana3_2238 - hypothetical protein (RefSeq), at 2,692,598 to 2,692,966 _2238 Shewana3_2239: Shewana3_2239 - GCN5-related N-acetyltransferase (RefSeq), at 2,693,093 to 2,693,545 _2239 Shewana3_2240: Shewana3_2240 - hypothetical protein (RefSeq), at 2,693,621 to 2,694,487 _2240 Position (kb) 2692 2693Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2691.766 kb on - strandat 2691.836 kb on + strandat 2692.104 kb on + strandat 2692.239 kb on + strandat 2692.589 kb on + strandat 2692.849 kb on + strand, within Shewana3_2238at 2692.873 kb on - strand, within Shewana3_2238at 2692.915 kb on + strand, within Shewana3_2238at 2692.937 kb on + strandat 2693.018 kb on + strandat 2693.072 kb on + strandat 2693.284 kb on + strand, within Shewana3_2239at 2693.284 kb on + strand, within Shewana3_2239at 2693.284 kb on + strand, within Shewana3_2239at 2693.284 kb on + strand, within Shewana3_2239at 2693.292 kb on - strand, within Shewana3_2239at 2693.292 kb on - strand, within Shewana3_2239at 2693.448 kb on - strand, within Shewana3_2239at 2693.508 kb on + strandat 2693.552 kb on + strandat 2693.812 kb on + strand, within Shewana3_2240

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,691,766 - +1.4
2,691,836 + +2.0
2,692,104 + +3.0
2,692,239 + -0.0
2,692,589 + -0.5
2,692,849 + Shewana3_2238 0.68 -0.3
2,692,873 - Shewana3_2238 0.75 +0.2
2,692,915 + Shewana3_2238 0.86 -3.2
2,692,937 + -1.4
2,693,018 + +0.7
2,693,072 + +0.4
2,693,284 + Shewana3_2239 0.42 -0.2
2,693,284 + Shewana3_2239 0.42 -0.5
2,693,284 + Shewana3_2239 0.42 +1.2
2,693,284 + Shewana3_2239 0.42 +0.3
2,693,292 - Shewana3_2239 0.44 +1.4
2,693,292 - Shewana3_2239 0.44 +0.4
2,693,448 - Shewana3_2239 0.78 +3.0
2,693,508 + +0.4
2,693,552 + +3.1
2,693,812 + Shewana3_2240 0.22 +1.4

Or see this region's nucleotide sequence