Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2213 and Shewana3_2214 are separated by 3 nucleotides Shewana3_2214 and Shewana3_2215 are separated by 0 nucleotides Shewana3_2215 and Shewana3_2216 are separated by 0 nucleotides
Shewana3_2213: Shewana3_2213 - response regulator receiver modulated CheB methylesterase (RefSeq), at 2,659,747 to 2,660,802
_2213
Shewana3_2214: Shewana3_2214 - chemoreceptor glutamine deamidase CheD (RefSeq), at 2,660,806 to 2,661,426
_2214
Shewana3_2215: Shewana3_2215 - MCP methyltransferase, CheR-type (RefSeq), at 2,661,427 to 2,662,257
_2215
Shewana3_2216: Shewana3_2216 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,662,258 to 2,664,231
_2216
Position (kb)
2660
2661
2662 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2659.867 kb on + strand, within Shewana3_2213 at 2659.875 kb on - strand, within Shewana3_2213 at 2660.027 kb on + strand, within Shewana3_2213 at 2660.034 kb on + strand, within Shewana3_2213 at 2660.281 kb on + strand, within Shewana3_2213 at 2660.360 kb on - strand, within Shewana3_2213 at 2661.028 kb on - strand, within Shewana3_2214 at 2661.286 kb on + strand, within Shewana3_2214 at 2661.286 kb on + strand, within Shewana3_2214 at 2661.294 kb on - strand, within Shewana3_2214 at 2661.294 kb on - strand, within Shewana3_2214 at 2661.294 kb on - strand, within Shewana3_2214 at 2661.709 kb on + strand, within Shewana3_2215 at 2661.722 kb on - strand, within Shewana3_2215 at 2661.816 kb on - strand, within Shewana3_2215 at 2661.910 kb on - strand, within Shewana3_2215 at 2661.914 kb on + strand, within Shewana3_2215 at 2662.143 kb on + strand, within Shewana3_2215 at 2662.199 kb on + strand at 2662.199 kb on + strand at 2662.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,659,867 + Shewana3_2213 0.11 +1.0 2,659,875 - Shewana3_2213 0.12 +2.0 2,660,027 + Shewana3_2213 0.27 -1.0 2,660,034 + Shewana3_2213 0.27 -1.8 2,660,281 + Shewana3_2213 0.51 -0.5 2,660,360 - Shewana3_2213 0.58 -0.0 2,661,028 - Shewana3_2214 0.36 -1.5 2,661,286 + Shewana3_2214 0.77 -0.3 2,661,286 + Shewana3_2214 0.77 -1.4 2,661,294 - Shewana3_2214 0.79 +1.0 2,661,294 - Shewana3_2214 0.79 +1.0 2,661,294 - Shewana3_2214 0.79 +0.7 2,661,709 + Shewana3_2215 0.34 -0.1 2,661,722 - Shewana3_2215 0.35 -0.8 2,661,816 - Shewana3_2215 0.47 -0.3 2,661,910 - Shewana3_2215 0.58 +0.4 2,661,914 + Shewana3_2215 0.59 -2.0 2,662,143 + Shewana3_2215 0.86 +1.4 2,662,199 + +1.4 2,662,199 + +0.4 2,662,413 - +1.0
Or see this region's nucleotide sequence