Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2199
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,638,268 | - | +1.9 | |||
2,638,284 | - | -0.1 | |||
2,638,361 | - | +1.9 | |||
2,638,633 | + | Shewana3_2198 | 0.38 | +1.3 | |
2,638,641 | - | Shewana3_2198 | 0.38 | +0.6 | |
2,638,706 | + | Shewana3_2198 | 0.46 | -0.7 | |
2,638,783 | + | Shewana3_2198 | 0.54 | +2.9 | |
2,638,966 | - | Shewana3_2198 | 0.74 | +1.9 | |
2,639,169 | + | +1.5 | |||
2,639,300 | - | Shewana3_2199 | 0.12 | +1.9 | |
2,639,319 | + | Shewana3_2199 | 0.14 | -0.2 | |
2,639,430 | + | Shewana3_2199 | 0.28 | +2.9 | |
2,639,640 | - | Shewana3_2199 | 0.55 | -2.1 | |
2,639,766 | - | Shewana3_2199 | 0.71 | -0.4 | |
2,640,164 | + | +3.9 | |||
2,640,207 | - | -0.5 | |||
2,640,260 | - | +0.6 | |||
2,640,487 | - | Shewana3_2200 | 0.21 | +1.3 | |
2,640,495 | + | Shewana3_2200 | 0.21 | +0.9 | |
2,640,754 | + | Shewana3_2200 | 0.35 | -0.1 | |
2,640,821 | + | Shewana3_2200 | 0.38 | +0.3 | |
2,640,836 | + | Shewana3_2200 | 0.39 | +1.3 | |
2,640,880 | - | Shewana3_2200 | 0.41 | +0.6 | |
2,640,945 | + | Shewana3_2200 | 0.45 | +0.3 | |
2,640,965 | + | Shewana3_2200 | 0.46 | -0.1 | |
2,640,987 | - | Shewana3_2200 | 0.47 | +0.9 |
Or see this region's nucleotide sequence