Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2198 and Shewana3_2199 are separated by 10 nucleotides Shewana3_2199 and Shewana3_2200 are separated by 91 nucleotides
Shewana3_2198: Shewana3_2198 - hypothetical protein (RefSeq), at 2,638,294 to 2,639,196
_2198
Shewana3_2199: Shewana3_2199 - hypothetical protein (RefSeq), at 2,639,207 to 2,639,989
_2199
Shewana3_2200: Shewana3_2200 - response regulator receiver protein (RefSeq), at 2,640,081 to 2,642,006
_2200
Position (kb)
2639
2640 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2638.268 kb on - strand at 2638.284 kb on - strand at 2638.361 kb on - strand at 2638.633 kb on + strand, within Shewana3_2198 at 2638.641 kb on - strand, within Shewana3_2198 at 2638.706 kb on + strand, within Shewana3_2198 at 2638.783 kb on + strand, within Shewana3_2198 at 2638.966 kb on - strand, within Shewana3_2198 at 2639.169 kb on + strand at 2639.300 kb on - strand, within Shewana3_2199 at 2639.319 kb on + strand, within Shewana3_2199 at 2639.430 kb on + strand, within Shewana3_2199 at 2639.640 kb on - strand, within Shewana3_2199 at 2639.766 kb on - strand, within Shewana3_2199 at 2640.164 kb on + strand at 2640.207 kb on - strand at 2640.260 kb on - strand at 2640.487 kb on - strand, within Shewana3_2200 at 2640.495 kb on + strand, within Shewana3_2200 at 2640.754 kb on + strand, within Shewana3_2200 at 2640.821 kb on + strand, within Shewana3_2200 at 2640.836 kb on + strand, within Shewana3_2200 at 2640.880 kb on - strand, within Shewana3_2200 at 2640.945 kb on + strand, within Shewana3_2200 at 2640.965 kb on + strand, within Shewana3_2200 at 2640.987 kb on - strand, within Shewana3_2200
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,638,268 - +1.9 2,638,284 - -0.1 2,638,361 - +1.9 2,638,633 + Shewana3_2198 0.38 +1.3 2,638,641 - Shewana3_2198 0.38 +0.6 2,638,706 + Shewana3_2198 0.46 -0.7 2,638,783 + Shewana3_2198 0.54 +2.9 2,638,966 - Shewana3_2198 0.74 +1.9 2,639,169 + +1.5 2,639,300 - Shewana3_2199 0.12 +1.9 2,639,319 + Shewana3_2199 0.14 -0.2 2,639,430 + Shewana3_2199 0.28 +2.9 2,639,640 - Shewana3_2199 0.55 -2.1 2,639,766 - Shewana3_2199 0.71 -0.4 2,640,164 + +3.9 2,640,207 - -0.5 2,640,260 - +0.6 2,640,487 - Shewana3_2200 0.21 +1.3 2,640,495 + Shewana3_2200 0.21 +0.9 2,640,754 + Shewana3_2200 0.35 -0.1 2,640,821 + Shewana3_2200 0.38 +0.3 2,640,836 + Shewana3_2200 0.39 +1.3 2,640,880 - Shewana3_2200 0.41 +0.6 2,640,945 + Shewana3_2200 0.45 +0.3 2,640,965 + Shewana3_2200 0.46 -0.1 2,640,987 - Shewana3_2200 0.47 +0.9
Or see this region's nucleotide sequence