Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2199

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2198 and Shewana3_2199 are separated by 10 nucleotidesShewana3_2199 and Shewana3_2200 are separated by 91 nucleotides Shewana3_2198: Shewana3_2198 - hypothetical protein (RefSeq), at 2,638,294 to 2,639,196 _2198 Shewana3_2199: Shewana3_2199 - hypothetical protein (RefSeq), at 2,639,207 to 2,639,989 _2199 Shewana3_2200: Shewana3_2200 - response regulator receiver protein (RefSeq), at 2,640,081 to 2,642,006 _2200 Position (kb) 2639 2640Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2638.268 kb on - strandat 2638.284 kb on - strandat 2638.361 kb on - strandat 2638.633 kb on + strand, within Shewana3_2198at 2638.641 kb on - strand, within Shewana3_2198at 2638.706 kb on + strand, within Shewana3_2198at 2638.783 kb on + strand, within Shewana3_2198at 2638.966 kb on - strand, within Shewana3_2198at 2639.169 kb on + strandat 2639.300 kb on - strand, within Shewana3_2199at 2639.319 kb on + strand, within Shewana3_2199at 2639.430 kb on + strand, within Shewana3_2199at 2639.640 kb on - strand, within Shewana3_2199at 2639.766 kb on - strand, within Shewana3_2199at 2640.164 kb on + strandat 2640.207 kb on - strandat 2640.260 kb on - strandat 2640.487 kb on - strand, within Shewana3_2200at 2640.495 kb on + strand, within Shewana3_2200at 2640.754 kb on + strand, within Shewana3_2200at 2640.821 kb on + strand, within Shewana3_2200at 2640.836 kb on + strand, within Shewana3_2200at 2640.880 kb on - strand, within Shewana3_2200at 2640.945 kb on + strand, within Shewana3_2200at 2640.965 kb on + strand, within Shewana3_2200at 2640.987 kb on - strand, within Shewana3_2200

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,638,268 - +1.9
2,638,284 - -0.1
2,638,361 - +1.9
2,638,633 + Shewana3_2198 0.38 +1.3
2,638,641 - Shewana3_2198 0.38 +0.6
2,638,706 + Shewana3_2198 0.46 -0.7
2,638,783 + Shewana3_2198 0.54 +2.9
2,638,966 - Shewana3_2198 0.74 +1.9
2,639,169 + +1.5
2,639,300 - Shewana3_2199 0.12 +1.9
2,639,319 + Shewana3_2199 0.14 -0.2
2,639,430 + Shewana3_2199 0.28 +2.9
2,639,640 - Shewana3_2199 0.55 -2.1
2,639,766 - Shewana3_2199 0.71 -0.4
2,640,164 + +3.9
2,640,207 - -0.5
2,640,260 - +0.6
2,640,487 - Shewana3_2200 0.21 +1.3
2,640,495 + Shewana3_2200 0.21 +0.9
2,640,754 + Shewana3_2200 0.35 -0.1
2,640,821 + Shewana3_2200 0.38 +0.3
2,640,836 + Shewana3_2200 0.39 +1.3
2,640,880 - Shewana3_2200 0.41 +0.6
2,640,945 + Shewana3_2200 0.45 +0.3
2,640,965 + Shewana3_2200 0.46 -0.1
2,640,987 - Shewana3_2200 0.47 +0.9

Or see this region's nucleotide sequence