Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2159

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2157 and Shewana3_2158 are separated by 132 nucleotidesShewana3_2158 and Shewana3_2159 are separated by 27 nucleotidesShewana3_2159 and Shewana3_2160 are separated by 79 nucleotides Shewana3_2157: Shewana3_2157 - Smr protein/MutS2 (RefSeq), at 2,586,084 to 2,586,674 _2157 Shewana3_2158: Shewana3_2158 - hypothetical protein (RefSeq), at 2,586,807 to 2,587,385 _2158 Shewana3_2159: Shewana3_2159 - SecC motif-containing protein (RefSeq), at 2,587,413 to 2,587,907 _2159 Shewana3_2160: Shewana3_2160 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 2,587,987 to 2,590,170 _2160 Position (kb) 2587 2588Strain fitness (log2 ratio) -1 0 1 2 3at 2586.418 kb on + strand, within Shewana3_2157at 2586.613 kb on + strand, within Shewana3_2157at 2587.516 kb on + strand, within Shewana3_2159at 2587.615 kb on + strand, within Shewana3_2159at 2587.623 kb on - strand, within Shewana3_2159at 2587.623 kb on - strand, within Shewana3_2159at 2587.635 kb on + strand, within Shewana3_2159at 2587.651 kb on + strand, within Shewana3_2159at 2587.681 kb on + strand, within Shewana3_2159at 2587.895 kb on + strandat 2588.416 kb on - strand, within Shewana3_2160at 2588.416 kb on - strand, within Shewana3_2160at 2588.798 kb on + strand, within Shewana3_2160

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,586,418 + Shewana3_2157 0.57 +2.8
2,586,613 + Shewana3_2157 0.90 +2.8
2,587,516 + Shewana3_2159 0.21 +0.0
2,587,615 + Shewana3_2159 0.41 -0.3
2,587,623 - Shewana3_2159 0.42 +2.8
2,587,623 - Shewana3_2159 0.42 -0.2
2,587,635 + Shewana3_2159 0.45 -1.0
2,587,651 + Shewana3_2159 0.48 +0.4
2,587,681 + Shewana3_2159 0.54 -0.5
2,587,895 + -1.3
2,588,416 - Shewana3_2160 0.20 +0.5
2,588,416 - Shewana3_2160 0.20 +2.8
2,588,798 + Shewana3_2160 0.37 +1.8

Or see this region's nucleotide sequence