Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2142 and Shewana3_2143 are separated by 101 nucleotides Shewana3_2143 and Shewana3_2144 are separated by 269 nucleotides Shewana3_2144 and Shewana3_2145 are separated by 740 nucleotides
Shewana3_2142: Shewana3_2142 - integrase catalytic subunit (RefSeq), at 2,566,187 to 2,566,909
_2142
Shewana3_2143: Shewana3_2143 - response regulator receiver protein (RefSeq), at 2,567,011 to 2,567,403
_2143
Shewana3_2144: Shewana3_2144 - Na+/H+ antiporter NhaC (RefSeq), at 2,567,673 to 2,569,055
_2144
Shewana3_2145: Shewana3_2145 - aminotransferase AlaT (RefSeq), at 2,569,796 to 2,571,010
_2145
Position (kb)
2567
2568
2569
2570 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2567.441 kb on + strand at 2567.441 kb on + strand at 2567.735 kb on - strand at 2567.735 kb on - strand at 2567.749 kb on - strand at 2568.158 kb on - strand, within Shewana3_2144 at 2568.336 kb on + strand, within Shewana3_2144 at 2568.344 kb on - strand, within Shewana3_2144 at 2568.458 kb on - strand, within Shewana3_2144 at 2568.566 kb on - strand, within Shewana3_2144 at 2568.645 kb on - strand, within Shewana3_2144 at 2569.551 kb on - strand at 2570.020 kb on - strand, within Shewana3_2145
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,567,441 + -0.6 2,567,441 + +1.8 2,567,735 - +0.4 2,567,735 - -0.1 2,567,749 - -0.5 2,568,158 - Shewana3_2144 0.35 -1.2 2,568,336 + Shewana3_2144 0.48 +0.8 2,568,344 - Shewana3_2144 0.49 +1.8 2,568,458 - Shewana3_2144 0.57 +2.2 2,568,566 - Shewana3_2144 0.65 -0.6 2,568,645 - Shewana3_2144 0.70 -1.8 2,569,551 - -1.0 2,570,020 - Shewana3_2145 0.18 -1.9
Or see this region's nucleotide sequence