Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2107 and Shewana3_2108 are separated by 12 nucleotides Shewana3_2108 and Shewana3_2109 are separated by 11 nucleotides Shewana3_2109 and Shewana3_2110 overlap by 1 nucleotides
Shewana3_2107: Shewana3_2107 - cytochrome c oxidase, cbb3-type, subunit I (RefSeq), at 2,531,582 to 2,533,018
_2107
Shewana3_2108: Shewana3_2108 - cytochrome c oxidase, cbb3-type, subunit II (RefSeq), at 2,533,031 to 2,533,657
_2108
Shewana3_2109: Shewana3_2109 - Cbb3-type cytochrome oxidase component (RefSeq), at 2,533,669 to 2,533,845
_2109
Shewana3_2110: Shewana3_2110 - cytochrome c oxidase, cbb3-type, subunit III (RefSeq), at 2,533,845 to 2,534,813
_2110
Position (kb)
2533
2534 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7
8
9
10 at 2532.710 kb on + strand, within Shewana3_2107 at 2532.710 kb on + strand, within Shewana3_2107 at 2532.798 kb on + strand, within Shewana3_2107 at 2532.884 kb on - strand at 2533.028 kb on - strand at 2533.174 kb on + strand, within Shewana3_2108 at 2533.450 kb on - strand, within Shewana3_2108 at 2533.853 kb on + strand at 2533.890 kb on - strand at 2533.924 kb on + strand at 2533.972 kb on + strand, within Shewana3_2110 at 2534.067 kb on - strand, within Shewana3_2110 at 2534.113 kb on + strand, within Shewana3_2110 at 2534.113 kb on + strand, within Shewana3_2110 at 2534.353 kb on - strand, within Shewana3_2110 at 2534.388 kb on - strand, within Shewana3_2110 at 2534.528 kb on + strand, within Shewana3_2110 at 2534.596 kb on + strand, within Shewana3_2110
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,532,710 + Shewana3_2107 0.78 +1.0 2,532,710 + Shewana3_2107 0.78 +0.5 2,532,798 + Shewana3_2107 0.85 +5.6 2,532,884 - +3.7 2,533,028 - +10.2 2,533,174 + Shewana3_2108 0.23 +10.1 2,533,450 - Shewana3_2108 0.67 +8.5 2,533,853 + +10.2 2,533,890 - +8.3 2,533,924 + +9.4 2,533,972 + Shewana3_2110 0.13 +10.0 2,534,067 - Shewana3_2110 0.23 +7.6 2,534,113 + Shewana3_2110 0.28 +10.1 2,534,113 + Shewana3_2110 0.28 +9.2 2,534,353 - Shewana3_2110 0.52 +7.9 2,534,388 - Shewana3_2110 0.56 +9.2 2,534,528 + Shewana3_2110 0.70 +9.9 2,534,596 + Shewana3_2110 0.78 +9.7
Or see this region's nucleotide sequence