Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2109

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2107 and Shewana3_2108 are separated by 12 nucleotidesShewana3_2108 and Shewana3_2109 are separated by 11 nucleotidesShewana3_2109 and Shewana3_2110 overlap by 1 nucleotides Shewana3_2107: Shewana3_2107 - cytochrome c oxidase, cbb3-type, subunit I (RefSeq), at 2,531,582 to 2,533,018 _2107 Shewana3_2108: Shewana3_2108 - cytochrome c oxidase, cbb3-type, subunit II (RefSeq), at 2,533,031 to 2,533,657 _2108 Shewana3_2109: Shewana3_2109 - Cbb3-type cytochrome oxidase component (RefSeq), at 2,533,669 to 2,533,845 _2109 Shewana3_2110: Shewana3_2110 - cytochrome c oxidase, cbb3-type, subunit III (RefSeq), at 2,533,845 to 2,534,813 _2110 Position (kb) 2533 2534Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9 10at 2532.710 kb on + strand, within Shewana3_2107at 2532.710 kb on + strand, within Shewana3_2107at 2532.798 kb on + strand, within Shewana3_2107at 2532.884 kb on - strandat 2533.028 kb on - strandat 2533.174 kb on + strand, within Shewana3_2108at 2533.450 kb on - strand, within Shewana3_2108at 2533.853 kb on + strandat 2533.890 kb on - strandat 2533.924 kb on + strandat 2533.972 kb on + strand, within Shewana3_2110at 2534.067 kb on - strand, within Shewana3_2110at 2534.113 kb on + strand, within Shewana3_2110at 2534.113 kb on + strand, within Shewana3_2110at 2534.353 kb on - strand, within Shewana3_2110at 2534.388 kb on - strand, within Shewana3_2110at 2534.528 kb on + strand, within Shewana3_2110at 2534.596 kb on + strand, within Shewana3_2110

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,532,710 + Shewana3_2107 0.78 +1.0
2,532,710 + Shewana3_2107 0.78 +0.5
2,532,798 + Shewana3_2107 0.85 +5.6
2,532,884 - +3.7
2,533,028 - +10.2
2,533,174 + Shewana3_2108 0.23 +10.1
2,533,450 - Shewana3_2108 0.67 +8.5
2,533,853 + +10.2
2,533,890 - +8.3
2,533,924 + +9.4
2,533,972 + Shewana3_2110 0.13 +10.0
2,534,067 - Shewana3_2110 0.23 +7.6
2,534,113 + Shewana3_2110 0.28 +10.1
2,534,113 + Shewana3_2110 0.28 +9.2
2,534,353 - Shewana3_2110 0.52 +7.9
2,534,388 - Shewana3_2110 0.56 +9.2
2,534,528 + Shewana3_2110 0.70 +9.9
2,534,596 + Shewana3_2110 0.78 +9.7

Or see this region's nucleotide sequence