Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2104

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2103 and Shewana3_2104 are separated by 992 nucleotidesShewana3_2104 and Shewana3_2105 are separated by 450 nucleotides Shewana3_2103: Shewana3_2103 - restriction endonuclease (RefSeq), at 2,525,702 to 2,526,448 _2103 Shewana3_2104: Shewana3_2104 - phage integrase family protein (RefSeq), at 2,527,441 to 2,528,736 _2104 Shewana3_2105: Shewana3_2105 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 2,529,187 to 2,530,764 _2105 Position (kb) 2527 2528 2529Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2526.649 kb on - strandat 2526.991 kb on - strandat 2527.176 kb on - strandat 2527.176 kb on - strandat 2527.273 kb on - strandat 2527.284 kb on - strandat 2527.571 kb on - strand, within Shewana3_2104at 2527.948 kb on - strand, within Shewana3_2104at 2528.119 kb on + strand, within Shewana3_2104at 2528.175 kb on + strand, within Shewana3_2104at 2528.182 kb on - strand, within Shewana3_2104at 2528.526 kb on - strand, within Shewana3_2104at 2528.902 kb on - strandat 2528.969 kb on - strandat 2529.309 kb on + strandat 2529.382 kb on - strand, within Shewana3_2105at 2529.384 kb on + strand, within Shewana3_2105at 2529.418 kb on + strand, within Shewana3_2105at 2529.471 kb on + strand, within Shewana3_2105at 2529.546 kb on - strand, within Shewana3_2105at 2529.732 kb on - strand, within Shewana3_2105

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,526,649 - +1.8
2,526,991 - +1.5
2,527,176 - +0.8
2,527,176 - +2.8
2,527,273 - +2.8
2,527,284 - -0.9
2,527,571 - Shewana3_2104 0.10 +2.8
2,527,948 - Shewana3_2104 0.39 +1.4
2,528,119 + Shewana3_2104 0.52 -0.4
2,528,175 + Shewana3_2104 0.57 +2.8
2,528,182 - Shewana3_2104 0.57 -0.2
2,528,526 - Shewana3_2104 0.84 -1.4
2,528,902 - +0.5
2,528,969 - -1.3
2,529,309 + -0.0
2,529,382 - Shewana3_2105 0.12 -1.2
2,529,384 + Shewana3_2105 0.12 -1.4
2,529,418 + Shewana3_2105 0.15 +1.2
2,529,471 + Shewana3_2105 0.18 +1.2
2,529,546 - Shewana3_2105 0.23 -1.8
2,529,732 - Shewana3_2105 0.35 +0.1

Or see this region's nucleotide sequence