Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2101

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2099 and Shewana3_2100 are separated by 259 nucleotidesShewana3_2100 and Shewana3_2101 are separated by 96 nucleotidesShewana3_2101 and Shewana3_2102 are separated by 233 nucleotidesShewana3_2102 and Shewana3_2103 are separated by 165 nucleotides Shewana3_2099: Shewana3_2099 - hypothetical protein (RefSeq), at 2,522,804 to 2,524,114 _2099 Shewana3_2100: Shewana3_2100 - transposase IS3/IS911 (RefSeq), at 2,524,374 to 2,524,574 _2100 Shewana3_2101: Shewana3_2101 - putative metal dependent phosphohydrolase (RefSeq), at 2,524,671 to 2,524,961 _2101 Shewana3_2102: Shewana3_2102 - hypothetical protein (RefSeq), at 2,525,195 to 2,525,536 _2102 Shewana3_2103: Shewana3_2103 - restriction endonuclease (RefSeq), at 2,525,702 to 2,526,448 _2103 Position (kb) 2524 2525Strain fitness (log2 ratio) -1 0 1 2 3at 2523.696 kb on - strand, within Shewana3_2099at 2523.717 kb on + strand, within Shewana3_2099at 2523.725 kb on - strand, within Shewana3_2099at 2523.725 kb on - strand, within Shewana3_2099at 2523.804 kb on + strand, within Shewana3_2099at 2523.834 kb on - strand, within Shewana3_2099at 2524.104 kb on + strandat 2524.131 kb on + strandat 2524.152 kb on + strandat 2524.288 kb on + strandat 2524.326 kb on + strandat 2524.404 kb on + strand, within Shewana3_2100at 2524.451 kb on + strand, within Shewana3_2100at 2524.812 kb on + strand, within Shewana3_2101at 2524.818 kb on + strand, within Shewana3_2101at 2524.839 kb on + strand, within Shewana3_2101at 2524.986 kb on + strandat 2524.991 kb on + strandat 2524.994 kb on - strandat 2525.019 kb on + strandat 2525.058 kb on + strandat 2525.126 kb on - strandat 2525.204 kb on + strandat 2525.323 kb on - strand, within Shewana3_2102at 2525.353 kb on + strand, within Shewana3_2102at 2525.690 kb on + strandat 2525.730 kb on - strandat 2525.831 kb on + strand, within Shewana3_2103at 2525.929 kb on + strand, within Shewana3_2103

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,523,696 - Shewana3_2099 0.68 +2.8
2,523,717 + Shewana3_2099 0.70 +0.8
2,523,725 - Shewana3_2099 0.70 -0.2
2,523,725 - Shewana3_2099 0.70 +2.8
2,523,804 + Shewana3_2099 0.76 -0.0
2,523,834 - Shewana3_2099 0.79 +1.8
2,524,104 + +0.2
2,524,131 + -0.2
2,524,152 + +1.2
2,524,288 + +0.8
2,524,326 + -0.0
2,524,404 + Shewana3_2100 0.15 +2.8
2,524,451 + Shewana3_2100 0.38 -0.8
2,524,812 + Shewana3_2101 0.48 +1.8
2,524,818 + Shewana3_2101 0.51 -0.0
2,524,839 + Shewana3_2101 0.58 -1.0
2,524,986 + +1.2
2,524,991 + +1.2
2,524,994 - +2.8
2,525,019 + +1.5
2,525,058 + -0.7
2,525,126 - +2.8
2,525,204 + -0.5
2,525,323 - Shewana3_2102 0.37 +0.8
2,525,353 + Shewana3_2102 0.46 +0.5
2,525,690 + +0.8
2,525,730 - -0.5
2,525,831 + Shewana3_2103 0.17 +0.2
2,525,929 + Shewana3_2103 0.30 +1.3

Or see this region's nucleotide sequence