Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2082 and Shewana3_2083 overlap by 1 nucleotides Shewana3_2083 and Shewana3_2084 are separated by 179 nucleotides
Shewana3_2082: Shewana3_2082 - arabinan endo-1,5-alpha-L-arabinosidase (RefSeq), at 2,493,427 to 2,494,497
_2082
Shewana3_2083: Shewana3_2083 - glycoside hydrolase family protein (RefSeq), at 2,494,497 to 2,496,401
_2083
Shewana3_2084: Shewana3_2084 - permease (RefSeq), at 2,496,581 to 2,497,336
_2084
Position (kb)
2494
2495
2496
2497 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2493.767 kb on - strand, within Shewana3_2082 at 2493.973 kb on + strand, within Shewana3_2082 at 2493.974 kb on + strand, within Shewana3_2082 at 2494.192 kb on + strand, within Shewana3_2082 at 2494.265 kb on - strand, within Shewana3_2082 at 2494.432 kb on - strand at 2494.436 kb on + strand at 2494.436 kb on + strand at 2494.436 kb on + strand at 2494.451 kb on + strand at 2494.577 kb on + strand at 2494.585 kb on - strand at 2494.585 kb on - strand at 2495.041 kb on - strand, within Shewana3_2083 at 2495.099 kb on + strand, within Shewana3_2083 at 2495.119 kb on + strand, within Shewana3_2083 at 2495.126 kb on + strand, within Shewana3_2083 at 2495.357 kb on - strand, within Shewana3_2083 at 2495.643 kb on + strand, within Shewana3_2083 at 2495.643 kb on + strand, within Shewana3_2083 at 2495.643 kb on + strand, within Shewana3_2083 at 2495.643 kb on + strand, within Shewana3_2083 at 2495.651 kb on - strand, within Shewana3_2083 at 2495.671 kb on - strand, within Shewana3_2083 at 2495.782 kb on - strand, within Shewana3_2083 at 2495.784 kb on + strand, within Shewana3_2083 at 2495.786 kb on + strand, within Shewana3_2083 at 2495.822 kb on + strand, within Shewana3_2083 at 2495.980 kb on - strand, within Shewana3_2083 at 2496.044 kb on + strand, within Shewana3_2083 at 2496.113 kb on + strand, within Shewana3_2083 at 2496.161 kb on + strand, within Shewana3_2083 at 2496.413 kb on + strand at 2496.416 kb on - strand at 2496.513 kb on + strand at 2496.685 kb on + strand, within Shewana3_2084 at 2496.704 kb on - strand, within Shewana3_2084 at 2496.725 kb on + strand, within Shewana3_2084 at 2496.766 kb on - strand, within Shewana3_2084 at 2497.067 kb on - strand, within Shewana3_2084 at 2497.141 kb on - strand, within Shewana3_2084 at 2497.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,493,767 - Shewana3_2082 0.32 +0.8 2,493,973 + Shewana3_2082 0.51 -0.7 2,493,974 + Shewana3_2082 0.51 -0.5 2,494,192 + Shewana3_2082 0.71 +0.5 2,494,265 - Shewana3_2082 0.78 +0.8 2,494,432 - +2.8 2,494,436 + +0.8 2,494,436 + +1.2 2,494,436 + +0.4 2,494,451 + -1.3 2,494,577 + -0.5 2,494,585 - +2.8 2,494,585 - +0.8 2,495,041 - Shewana3_2083 0.29 -1.4 2,495,099 + Shewana3_2083 0.32 -1.4 2,495,119 + Shewana3_2083 0.33 -0.1 2,495,126 + Shewana3_2083 0.33 -0.0 2,495,357 - Shewana3_2083 0.45 +1.8 2,495,643 + Shewana3_2083 0.60 -0.7 2,495,643 + Shewana3_2083 0.60 -1.4 2,495,643 + Shewana3_2083 0.60 -0.2 2,495,643 + Shewana3_2083 0.60 -0.4 2,495,651 - Shewana3_2083 0.61 +0.5 2,495,671 - Shewana3_2083 0.62 +0.5 2,495,782 - Shewana3_2083 0.67 +2.8 2,495,784 + Shewana3_2083 0.68 -0.4 2,495,786 + Shewana3_2083 0.68 -1.5 2,495,822 + Shewana3_2083 0.70 -0.1 2,495,980 - Shewana3_2083 0.78 +0.5 2,496,044 + Shewana3_2083 0.81 -0.4 2,496,113 + Shewana3_2083 0.85 -0.0 2,496,161 + Shewana3_2083 0.87 +0.4 2,496,413 + -0.2 2,496,416 - +0.8 2,496,513 + +1.4 2,496,685 + Shewana3_2084 0.14 -0.0 2,496,704 - Shewana3_2084 0.16 -2.7 2,496,725 + Shewana3_2084 0.19 +2.8 2,496,766 - Shewana3_2084 0.24 +0.4 2,497,067 - Shewana3_2084 0.64 +0.3 2,497,141 - Shewana3_2084 0.74 -0.7 2,497,362 - +1.2
Or see this region's nucleotide sequence