Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2079

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2078 and Shewana3_2079 are separated by 307 nucleotidesShewana3_2079 and Shewana3_2080 are separated by 277 nucleotides Shewana3_2078: Shewana3_2078 - glycoside hydrolase family protein (RefSeq), at 2,487,102 to 2,488,103 _2078 Shewana3_2079: Shewana3_2079 - hypothetical protein (RefSeq), at 2,488,411 to 2,489,001 _2079 Shewana3_2080: Shewana3_2080 - acetyl-CoA carboxylase, biotin carboxylase (RefSeq), at 2,489,279 to 2,491,666 _2080 Position (kb) 2488 2489 2490Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2487.544 kb on - strand, within Shewana3_2078at 2487.612 kb on + strand, within Shewana3_2078at 2487.985 kb on - strand, within Shewana3_2078at 2488.087 kb on + strandat 2488.345 kb on + strandat 2488.359 kb on - strandat 2488.686 kb on + strand, within Shewana3_2079at 2488.696 kb on + strand, within Shewana3_2079at 2488.882 kb on - strand, within Shewana3_2079at 2489.133 kb on + strandat 2489.230 kb on - strandat 2489.382 kb on - strandat 2489.667 kb on + strand, within Shewana3_2080at 2489.684 kb on + strand, within Shewana3_2080at 2489.704 kb on + strand, within Shewana3_2080

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,487,544 - Shewana3_2078 0.44 +0.5
2,487,612 + Shewana3_2078 0.51 +1.8
2,487,985 - Shewana3_2078 0.88 -0.2
2,488,087 + -2.9
2,488,345 + +0.2
2,488,359 - -0.9
2,488,686 + Shewana3_2079 0.47 -1.5
2,488,696 + Shewana3_2079 0.48 -0.2
2,488,882 - Shewana3_2079 0.80 +0.8
2,489,133 + -1.6
2,489,230 - +0.5
2,489,382 - +0.5
2,489,667 + Shewana3_2080 0.16 +2.8
2,489,684 + Shewana3_2080 0.17 -2.7
2,489,704 + Shewana3_2080 0.18 -1.4

Or see this region's nucleotide sequence