Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2077 and Shewana3_2078 are separated by 66 nucleotides Shewana3_2078 and Shewana3_2079 are separated by 307 nucleotides
Shewana3_2077: Shewana3_2077 - glycoside hydrolase family protein (RefSeq), at 2,485,902 to 2,487,035
_2077
Shewana3_2078: Shewana3_2078 - glycoside hydrolase family protein (RefSeq), at 2,487,102 to 2,488,103
_2078
Shewana3_2079: Shewana3_2079 - hypothetical protein (RefSeq), at 2,488,411 to 2,489,001
_2079
Position (kb)
2487
2488
2489 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 2486.227 kb on - strand, within Shewana3_2077 at 2486.458 kb on + strand, within Shewana3_2077 at 2486.465 kb on + strand, within Shewana3_2077 at 2486.466 kb on - strand, within Shewana3_2077 at 2486.466 kb on - strand, within Shewana3_2077 at 2486.506 kb on - strand, within Shewana3_2077 at 2486.717 kb on + strand, within Shewana3_2077 at 2486.725 kb on - strand, within Shewana3_2077 at 2486.725 kb on - strand, within Shewana3_2077 at 2486.801 kb on - strand, within Shewana3_2077 at 2486.867 kb on + strand, within Shewana3_2077 at 2486.877 kb on - strand, within Shewana3_2077 at 2486.930 kb on - strand at 2486.998 kb on + strand at 2487.221 kb on + strand, within Shewana3_2078 at 2487.244 kb on + strand, within Shewana3_2078 at 2487.252 kb on - strand, within Shewana3_2078 at 2487.544 kb on - strand, within Shewana3_2078 at 2487.612 kb on + strand, within Shewana3_2078 at 2487.985 kb on - strand, within Shewana3_2078 at 2488.087 kb on + strand at 2488.345 kb on + strand at 2488.359 kb on - strand at 2488.686 kb on + strand, within Shewana3_2079 at 2488.696 kb on + strand, within Shewana3_2079 at 2488.882 kb on - strand, within Shewana3_2079
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,486,227 - Shewana3_2077 0.29 +0.4 2,486,458 + Shewana3_2077 0.49 -0.4 2,486,465 + Shewana3_2077 0.50 +1.0 2,486,466 - Shewana3_2077 0.50 -0.2 2,486,466 - Shewana3_2077 0.50 -0.5 2,486,506 - Shewana3_2077 0.53 -0.7 2,486,717 + Shewana3_2077 0.72 -0.1 2,486,725 - Shewana3_2077 0.73 -0.8 2,486,725 - Shewana3_2077 0.73 +0.8 2,486,801 - Shewana3_2077 0.79 +0.0 2,486,867 + Shewana3_2077 0.85 +0.7 2,486,877 - Shewana3_2077 0.86 +7.2 2,486,930 - -1.7 2,486,998 + +1.0 2,487,221 + Shewana3_2078 0.12 +0.8 2,487,244 + Shewana3_2078 0.14 -1.3 2,487,252 - Shewana3_2078 0.15 -0.2 2,487,544 - Shewana3_2078 0.44 +0.5 2,487,612 + Shewana3_2078 0.51 +1.8 2,487,985 - Shewana3_2078 0.88 -0.2 2,488,087 + -2.9 2,488,345 + +0.2 2,488,359 - -0.9 2,488,686 + Shewana3_2079 0.47 -1.5 2,488,696 + Shewana3_2079 0.48 -0.2 2,488,882 - Shewana3_2079 0.80 +0.8
Or see this region's nucleotide sequence