Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2050 and Shewana3_2051 are separated by 69 nucleotides Shewana3_2051 and Shewana3_2052 are separated by 8 nucleotides Shewana3_2052 and Shewana3_2053 overlap by 8 nucleotides Shewana3_2053 and Shewana3_2054 are separated by 18 nucleotides
Shewana3_2050: Shewana3_2050 - DNA translocase FtsK (RefSeq), at 2,457,918 to 2,460,671
_2050
Shewana3_2051: Shewana3_2051 - outer membrane lipoprotein carrier protein LolA (RefSeq), at 2,460,741 to 2,461,361
_2051
Shewana3_2052: Shewana3_2052 - recombination factor protein RarA (RefSeq), at 2,461,370 to 2,462,701
_2052
Shewana3_2053: Shewana3_2053 - camphor resistance protein CrcB (RefSeq), at 2,462,694 to 2,463,068
_2053
Shewana3_2054: Shewana3_2054 - seryl-tRNA synthetase (RefSeq), at 2,463,087 to 2,464,373
_2054
Position (kb)
2461
2462
2463 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2461.455 kb on - strand at 2461.496 kb on + strand at 2461.736 kb on - strand, within Shewana3_2052 at 2461.975 kb on + strand, within Shewana3_2052 at 2461.975 kb on + strand, within Shewana3_2052 at 2462.001 kb on + strand, within Shewana3_2052 at 2462.033 kb on - strand, within Shewana3_2052 at 2462.307 kb on - strand, within Shewana3_2052 at 2462.584 kb on + strand at 2462.795 kb on + strand, within Shewana3_2053
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,461,455 - -0.7 2,461,496 + +1.8 2,461,736 - Shewana3_2052 0.27 +0.2 2,461,975 + Shewana3_2052 0.45 +1.8 2,461,975 + Shewana3_2052 0.45 -0.0 2,462,001 + Shewana3_2052 0.47 -0.8 2,462,033 - Shewana3_2052 0.50 +2.8 2,462,307 - Shewana3_2052 0.70 +0.4 2,462,584 + +2.8 2,462,795 + Shewana3_2053 0.27 -0.2
Or see this region's nucleotide sequence