Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2049 and Shewana3_2050 are separated by 321 nucleotides Shewana3_2050 and Shewana3_2051 are separated by 69 nucleotides Shewana3_2051 and Shewana3_2052 are separated by 8 nucleotides
Shewana3_2049: Shewana3_2049 - leucine-responsive transcriptional regulator (RefSeq), at 2,457,090 to 2,457,596
_2049
Shewana3_2050: Shewana3_2050 - DNA translocase FtsK (RefSeq), at 2,457,918 to 2,460,671
_2050
Shewana3_2051: Shewana3_2051 - outer membrane lipoprotein carrier protein LolA (RefSeq), at 2,460,741 to 2,461,361
_2051
Shewana3_2052: Shewana3_2052 - recombination factor protein RarA (RefSeq), at 2,461,370 to 2,462,701
_2052
Position (kb)
2457
2458
2459
2460
2461 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2456.993 kb on + strand at 2457.004 kb on - strand at 2457.004 kb on - strand at 2457.191 kb on + strand, within Shewana3_2049 at 2457.191 kb on + strand, within Shewana3_2049 at 2457.199 kb on - strand, within Shewana3_2049 at 2457.219 kb on - strand, within Shewana3_2049 at 2457.365 kb on + strand, within Shewana3_2049 at 2457.378 kb on + strand, within Shewana3_2049 at 2458.576 kb on + strand, within Shewana3_2050 at 2461.455 kb on - strand at 2461.496 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,456,993 + -2.1 2,457,004 - +0.2 2,457,004 - +0.1 2,457,191 + Shewana3_2049 0.20 +3.1 2,457,191 + Shewana3_2049 0.20 +1.3 2,457,199 - Shewana3_2049 0.21 +0.2 2,457,219 - Shewana3_2049 0.25 +1.4 2,457,365 + Shewana3_2049 0.54 -0.1 2,457,378 + Shewana3_2049 0.57 +1.4 2,458,576 + Shewana3_2050 0.24 +0.4 2,461,455 - -0.7 2,461,496 + +1.8
Or see this region's nucleotide sequence