Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2042
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,449,649 | + | Shewana3_2040 | 0.11 | -0.5 | |
2,449,780 | + | Shewana3_2040 | 0.32 | +0.4 | |
2,449,788 | - | Shewana3_2040 | 0.33 | +1.8 | |
2,449,821 | - | Shewana3_2040 | 0.38 | +1.8 | |
2,449,896 | - | Shewana3_2040 | 0.51 | +1.8 | |
2,449,973 | + | Shewana3_2040 | 0.63 | -0.3 | |
2,450,095 | - | Shewana3_2040 | 0.83 | +1.8 | |
2,450,303 | - | Shewana3_2041 | 0.45 | +1.2 | |
2,450,422 | - | +0.8 | |||
2,450,473 | + | -0.4 | |||
2,450,479 | - | +0.2 | |||
2,450,584 | + | +0.4 | |||
2,450,584 | + | -0.4 | |||
2,450,679 | + | -0.9 | |||
2,450,692 | - | Shewana3_2042 | 0.12 | -1.3 | |
2,450,772 | + | Shewana3_2042 | 0.29 | -1.6 | |
2,450,782 | + | Shewana3_2042 | 0.31 | +0.4 | |
2,450,790 | - | Shewana3_2042 | 0.33 | +1.2 | |
2,450,892 | - | +2.8 | |||
2,450,989 | + | Shewana3_2042 | 0.74 | -1.8 | |
2,450,997 | - | Shewana3_2042 | 0.76 | +0.4 | |
2,451,089 | + | +0.1 | |||
2,451,178 | + | +3.6 |
Or see this region's nucleotide sequence