Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1994

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1993 and Shewana3_1994 overlap by 8 nucleotidesShewana3_1994 and Shewana3_1995 are separated by 50 nucleotides Shewana3_1993: Shewana3_1993 - acriflavin resistance protein (RefSeq), at 2,373,185 to 2,376,352 _1993 Shewana3_1994: Shewana3_1994 - outer membrane efflux protein (RefSeq), at 2,376,345 to 2,377,832 _1994 Shewana3_1995: Shewana3_1995 - hypothetical protein (RefSeq), at 2,377,883 to 2,379,940 _1995 Position (kb) 2376 2377 2378Strain fitness (log2 ratio) -1 0 1 2 3 4at 2375.561 kb on - strand, within Shewana3_1993at 2375.609 kb on + strand, within Shewana3_1993at 2375.915 kb on + strand, within Shewana3_1993at 2375.915 kb on + strand, within Shewana3_1993at 2376.226 kb on - strandat 2376.504 kb on + strand, within Shewana3_1994at 2376.512 kb on - strand, within Shewana3_1994at 2376.719 kb on - strand, within Shewana3_1994at 2376.849 kb on - strand, within Shewana3_1994at 2376.986 kb on + strand, within Shewana3_1994at 2377.434 kb on - strand, within Shewana3_1994at 2377.945 kb on + strandat 2378.450 kb on - strand, within Shewana3_1995at 2378.450 kb on - strand, within Shewana3_1995at 2378.521 kb on - strand, within Shewana3_1995at 2378.585 kb on + strand, within Shewana3_1995at 2378.750 kb on - strand, within Shewana3_1995

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,375,561 - Shewana3_1993 0.75 +3.9
2,375,609 + Shewana3_1993 0.77 +2.9
2,375,915 + Shewana3_1993 0.86 +0.3
2,375,915 + Shewana3_1993 0.86 +0.3
2,376,226 - +2.9
2,376,504 + Shewana3_1994 0.11 -0.0
2,376,512 - Shewana3_1994 0.11 +2.9
2,376,719 - Shewana3_1994 0.25 +2.9
2,376,849 - Shewana3_1994 0.34 -0.7
2,376,986 + Shewana3_1994 0.43 +1.9
2,377,434 - Shewana3_1994 0.73 +1.3
2,377,945 + +0.9
2,378,450 - Shewana3_1995 0.28 +0.5
2,378,450 - Shewana3_1995 0.28 -0.8
2,378,521 - Shewana3_1995 0.31 +3.9
2,378,585 + Shewana3_1995 0.34 -0.5
2,378,750 - Shewana3_1995 0.42 -0.3

Or see this region's nucleotide sequence