Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1947

Experiment: Paraquat dichloride 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1946 and Shewana3_1947 overlap by 26 nucleotidesShewana3_1947 and Shewana3_1948 overlap by 1 nucleotides Shewana3_1946: Shewana3_1946 - response regulator receiver protein (RefSeq), at 2,313,761 to 2,315,701 _1946 Shewana3_1947: Shewana3_1947 - alpha-L-glutamate ligase-like protein (RefSeq), at 2,315,676 to 2,316,620 _1947 Shewana3_1948: Shewana3_1948 - hypothetical protein (RefSeq), at 2,316,620 to 2,318,128 _1948 Position (kb) 2315 2316 2317Strain fitness (log2 ratio) -1 0 1 2 3at 2314.765 kb on - strand, within Shewana3_1946at 2314.945 kb on - strand, within Shewana3_1946at 2314.992 kb on - strand, within Shewana3_1946at 2315.327 kb on - strand, within Shewana3_1946at 2315.404 kb on + strand, within Shewana3_1946at 2315.412 kb on - strand, within Shewana3_1946at 2315.642 kb on - strandat 2315.896 kb on - strand, within Shewana3_1947at 2315.920 kb on - strand, within Shewana3_1947at 2315.999 kb on - strand, within Shewana3_1947at 2316.259 kb on - strand, within Shewana3_1947at 2316.469 kb on - strand, within Shewana3_1947at 2316.665 kb on + strandat 2316.751 kb on - strandat 2316.910 kb on - strand, within Shewana3_1948at 2316.985 kb on + strandat 2317.101 kb on - strand, within Shewana3_1948

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
remove
2,314,765 - Shewana3_1946 0.52 +0.9
2,314,945 - Shewana3_1946 0.61 -0.5
2,314,992 - Shewana3_1946 0.63 +2.9
2,315,327 - Shewana3_1946 0.81 +2.4
2,315,404 + Shewana3_1946 0.85 +2.9
2,315,412 - Shewana3_1946 0.85 +2.9
2,315,642 - +1.3
2,315,896 - Shewana3_1947 0.23 +0.4
2,315,920 - Shewana3_1947 0.26 +0.3
2,315,999 - Shewana3_1947 0.34 -0.8
2,316,259 - Shewana3_1947 0.62 +1.3
2,316,469 - Shewana3_1947 0.84 +0.9
2,316,665 + +2.9
2,316,751 - -1.4
2,316,910 - Shewana3_1948 0.19 -0.7
2,316,985 + +2.9
2,317,101 - Shewana3_1948 0.32 +0.9

Or see this region's nucleotide sequence