Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1945

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1944 and Shewana3_1945 are separated by 173 nucleotidesShewana3_1945 and Shewana3_1946 overlap by 74 nucleotides Shewana3_1944: Shewana3_1944 - LysR family transcriptional regulator (RefSeq), at 2,311,559 to 2,312,461 _1944 Shewana3_1945: Shewana3_1945 - hypothetical protein (RefSeq), at 2,312,635 to 2,313,834 _1945 Shewana3_1946: Shewana3_1946 - response regulator receiver protein (RefSeq), at 2,313,761 to 2,315,701 _1946 Position (kb) 2312 2313 2314Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2311.894 kb on + strand, within Shewana3_1944at 2312.308 kb on + strand, within Shewana3_1944at 2312.360 kb on - strand, within Shewana3_1944at 2312.456 kb on + strandat 2312.464 kb on - strandat 2312.988 kb on - strand, within Shewana3_1945at 2313.052 kb on - strand, within Shewana3_1945at 2313.098 kb on + strand, within Shewana3_1945at 2313.106 kb on - strand, within Shewana3_1945at 2313.181 kb on - strand, within Shewana3_1945at 2313.205 kb on - strand, within Shewana3_1945at 2313.373 kb on + strand, within Shewana3_1945at 2313.383 kb on - strand, within Shewana3_1945at 2313.402 kb on - strand, within Shewana3_1945at 2313.457 kb on + strand, within Shewana3_1945at 2313.514 kb on - strand, within Shewana3_1945at 2313.923 kb on - strandat 2314.155 kb on - strand, within Shewana3_1946at 2314.315 kb on + strand, within Shewana3_1946at 2314.387 kb on - strand, within Shewana3_1946at 2314.586 kb on - strand, within Shewana3_1946at 2314.765 kb on - strand, within Shewana3_1946

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,311,894 + Shewana3_1944 0.37 -0.1
2,312,308 + Shewana3_1944 0.83 -0.3
2,312,360 - Shewana3_1944 0.89 +0.5
2,312,456 + +0.3
2,312,464 - -1.0
2,312,988 - Shewana3_1945 0.29 -1.3
2,313,052 - Shewana3_1945 0.35 -1.3
2,313,098 + Shewana3_1945 0.39 +1.9
2,313,106 - Shewana3_1945 0.39 -0.6
2,313,181 - Shewana3_1945 0.46 +0.5
2,313,205 - Shewana3_1945 0.47 +0.9
2,313,373 + Shewana3_1945 0.61 -1.1
2,313,383 - Shewana3_1945 0.62 +5.4
2,313,402 - Shewana3_1945 0.64 -0.6
2,313,457 + Shewana3_1945 0.69 +0.9
2,313,514 - Shewana3_1945 0.73 +0.9
2,313,923 - +1.9
2,314,155 - Shewana3_1946 0.20 +1.3
2,314,315 + Shewana3_1946 0.29 +2.9
2,314,387 - Shewana3_1946 0.32 +0.5
2,314,586 - Shewana3_1946 0.43 +1.3
2,314,765 - Shewana3_1946 0.52 +0.9

Or see this region's nucleotide sequence