Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1942

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntthiH and Shewana3_1942 are separated by 111 nucleotidesShewana3_1942 and Shewana3_1943 are separated by 2 nucleotides Shewana3_1941: thiH - thiamine biosynthesis protein ThiH (RefSeq), at 2,307,669 to 2,308,784 thiH Shewana3_1942: Shewana3_1942 - methyl-accepting chemotaxis protein (RefSeq), at 2,308,896 to 2,309,159 _1942 Shewana3_1943: Shewana3_1943 - protein-glutamate O-methyltransferase (RefSeq), at 2,309,162 to 2,311,384 _1943 Position (kb) 2308 2309 2310Strain fitness (log2 ratio) -1 0 1 2 3at 2307.927 kb on - strand, within thiHat 2308.149 kb on + strand, within thiHat 2308.335 kb on - strand, within thiHat 2308.389 kb on - strand, within thiHat 2308.459 kb on - strand, within thiHat 2308.473 kb on - strand, within thiHat 2308.512 kb on + strand, within thiHat 2308.596 kb on - strand, within thiHat 2308.616 kb on - strand, within thiHat 2308.616 kb on - strand, within thiHat 2308.616 kb on - strand, within thiHat 2308.625 kb on - strand, within thiHat 2308.645 kb on + strand, within thiHat 2308.709 kb on + strandat 2308.987 kb on - strand, within Shewana3_1942at 2309.379 kb on + strandat 2309.615 kb on + strand, within Shewana3_1943at 2309.852 kb on + strand, within Shewana3_1943at 2310.077 kb on - strand, within Shewana3_1943

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,307,927 - thiH Shewana3_1941 0.23 +0.1
2,308,149 + thiH Shewana3_1941 0.43 +1.7
2,308,335 - thiH Shewana3_1941 0.60 +0.6
2,308,389 - thiH Shewana3_1941 0.65 +2.3
2,308,459 - thiH Shewana3_1941 0.71 +1.9
2,308,473 - thiH Shewana3_1941 0.72 +1.9
2,308,512 + thiH Shewana3_1941 0.76 -1.0
2,308,596 - thiH Shewana3_1941 0.83 +1.3
2,308,616 - thiH Shewana3_1941 0.85 +1.3
2,308,616 - thiH Shewana3_1941 0.85 +0.1
2,308,616 - thiH Shewana3_1941 0.85 -0.1
2,308,625 - thiH Shewana3_1941 0.86 +1.9
2,308,645 + thiH Shewana3_1941 0.87 -1.2
2,308,709 + -1.3
2,308,987 - Shewana3_1942 0.34 -0.7
2,309,379 + +0.9
2,309,615 + Shewana3_1943 0.20 +2.8
2,309,852 + Shewana3_1943 0.31 -0.9
2,310,077 - Shewana3_1943 0.41 +0.7

Or see this region's nucleotide sequence