Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1867

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1866 and Shewana3_1867 are separated by 129 nucleotidesShewana3_1867 and Shewana3_1868 overlap by 1 nucleotides Shewana3_1866: Shewana3_1866 - lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (RefSeq), at 2,211,053 to 2,211,991 _1866 Shewana3_1867: Shewana3_1867 - hydrogenase nickel insertion protein HypA (RefSeq), at 2,212,121 to 2,212,477 _1867 Shewana3_1868: Shewana3_1868 - hydrogenase expression/formation protein HypE (RefSeq), at 2,212,477 to 2,213,496 _1868 Position (kb) 2212 2213Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 2211.196 kb on - strandat 2211.523 kb on + strand, within Shewana3_1866at 2211.569 kb on + strand, within Shewana3_1866at 2212.204 kb on - strand, within Shewana3_1867at 2212.209 kb on + strand, within Shewana3_1867at 2212.494 kb on - strandat 2212.520 kb on - strandat 2212.649 kb on - strand, within Shewana3_1868at 2212.717 kb on + strand, within Shewana3_1868at 2212.721 kb on - strand, within Shewana3_1868at 2213.172 kb on - strand, within Shewana3_1868at 2213.334 kb on + strand, within Shewana3_1868at 2213.382 kb on + strand, within Shewana3_1868at 2213.448 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,211,196 - +3.0
2,211,523 + Shewana3_1866 0.50 +2.0
2,211,569 + Shewana3_1866 0.55 +1.8
2,212,204 - Shewana3_1867 0.23 -1.5
2,212,209 + Shewana3_1867 0.25 +0.4
2,212,494 - -0.2
2,212,520 - -1.4
2,212,649 - Shewana3_1868 0.17 +0.5
2,212,717 + Shewana3_1868 0.24 +3.0
2,212,721 - Shewana3_1868 0.24 +0.2
2,213,172 - Shewana3_1868 0.68 +6.5
2,213,334 + Shewana3_1868 0.84 +3.0
2,213,382 + Shewana3_1868 0.89 -0.2
2,213,448 + +1.0

Or see this region's nucleotide sequence