Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1816

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1815 and Shewana3_1816 are separated by 96 nucleotidesShewana3_1816 and Shewana3_1817 are separated by 4 nucleotidesShewana3_1817 and Shewana3_1818 are separated by 15 nucleotides Shewana3_1815: Shewana3_1815 - hypothetical protein (RefSeq), at 2,142,170 to 2,142,850 _1815 Shewana3_1816: Shewana3_1816 - hypothetical protein (RefSeq), at 2,142,947 to 2,143,714 _1816 Shewana3_1817: Shewana3_1817 - hypothetical protein (RefSeq), at 2,143,719 to 2,144,261 _1817 Shewana3_1818: Shewana3_1818 - hypothetical protein (RefSeq), at 2,144,277 to 2,147,750 _1818 Position (kb) 2142 2143 2144Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2141.980 kb on + strandat 2142.285 kb on + strand, within Shewana3_1815at 2142.293 kb on - strand, within Shewana3_1815at 2142.295 kb on + strand, within Shewana3_1815at 2142.435 kb on - strand, within Shewana3_1815at 2142.505 kb on + strand, within Shewana3_1815at 2142.740 kb on + strand, within Shewana3_1815at 2142.799 kb on - strandat 2143.134 kb on + strand, within Shewana3_1816at 2143.469 kb on - strand, within Shewana3_1816at 2143.773 kb on + strandat 2143.780 kb on - strand, within Shewana3_1817at 2143.874 kb on + strand, within Shewana3_1817at 2143.874 kb on + strand, within Shewana3_1817at 2143.874 kb on + strand, within Shewana3_1817at 2143.887 kb on - strand, within Shewana3_1817at 2143.974 kb on - strand, within Shewana3_1817at 2144.116 kb on + strand, within Shewana3_1817at 2144.126 kb on + strand, within Shewana3_1817at 2144.360 kb on + strandat 2144.368 kb on - strandat 2144.368 kb on - strandat 2144.386 kb on + strandat 2144.386 kb on + strandat 2144.386 kb on + strandat 2144.386 kb on + strandat 2144.430 kb on + strandat 2144.490 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,141,980 + +0.1
2,142,285 + Shewana3_1815 0.17 +1.1
2,142,293 - Shewana3_1815 0.18 +3.1
2,142,295 + Shewana3_1815 0.18 -2.0
2,142,435 - Shewana3_1815 0.39 +2.1
2,142,505 + Shewana3_1815 0.49 +1.8
2,142,740 + Shewana3_1815 0.84 -1.3
2,142,799 - -0.1
2,143,134 + Shewana3_1816 0.24 +0.1
2,143,469 - Shewana3_1816 0.68 -0.2
2,143,773 + +2.1
2,143,780 - Shewana3_1817 0.11 +2.1
2,143,874 + Shewana3_1817 0.29 +0.1
2,143,874 + Shewana3_1817 0.29 -0.7
2,143,874 + Shewana3_1817 0.29 +0.0
2,143,887 - Shewana3_1817 0.31 +0.8
2,143,974 - Shewana3_1817 0.47 +3.1
2,144,116 + Shewana3_1817 0.73 -1.6
2,144,126 + Shewana3_1817 0.75 -0.6
2,144,360 + -0.4
2,144,368 - +2.1
2,144,368 - +3.1
2,144,386 + -0.2
2,144,386 + +2.1
2,144,386 + -0.6
2,144,386 + +0.2
2,144,430 + +0.1
2,144,490 + +0.4

Or see this region's nucleotide sequence