Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1734 and Shewana3_1735 are separated by 181 nucleotides Shewana3_1735 and Shewana3_1736 are separated by 124 nucleotides
Shewana3_1734: Shewana3_1734 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 2,042,126 to 2,043,190
_1734
Shewana3_1735: Shewana3_1735 - hypothetical protein (RefSeq), at 2,043,372 to 2,044,184
_1735
Shewana3_1736: Shewana3_1736 - phosphoenolpyruvate synthase (RefSeq), at 2,044,309 to 2,046,678
_1736
Position (kb)
2043
2044
2045 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2042.421 kb on - strand, within Shewana3_1734 at 2042.651 kb on + strand, within Shewana3_1734 at 2042.691 kb on - strand, within Shewana3_1734 at 2042.710 kb on + strand, within Shewana3_1734 at 2042.951 kb on + strand, within Shewana3_1734 at 2042.978 kb on + strand, within Shewana3_1734 at 2043.032 kb on + strand, within Shewana3_1734 at 2043.120 kb on + strand at 2043.143 kb on - strand at 2043.254 kb on + strand at 2043.256 kb on + strand at 2043.256 kb on + strand at 2043.264 kb on - strand at 2043.264 kb on - strand at 2043.363 kb on - strand at 2043.438 kb on - strand at 2043.512 kb on + strand, within Shewana3_1735 at 2043.512 kb on + strand, within Shewana3_1735 at 2044.243 kb on - strand at 2044.450 kb on + strand at 2044.563 kb on + strand, within Shewana3_1736 at 2044.600 kb on + strand, within Shewana3_1736 at 2044.600 kb on + strand, within Shewana3_1736 at 2044.600 kb on + strand, within Shewana3_1736 at 2044.832 kb on + strand, within Shewana3_1736 at 2044.847 kb on + strand, within Shewana3_1736 at 2044.855 kb on - strand, within Shewana3_1736 at 2044.933 kb on + strand, within Shewana3_1736 at 2045.094 kb on + strand, within Shewana3_1736
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,042,421 - Shewana3_1734 0.28 +2.7 2,042,651 + Shewana3_1734 0.49 +0.8 2,042,691 - Shewana3_1734 0.53 +1.7 2,042,710 + Shewana3_1734 0.55 +0.1 2,042,951 + Shewana3_1734 0.77 +0.1 2,042,978 + Shewana3_1734 0.80 +0.9 2,043,032 + Shewana3_1734 0.85 +1.5 2,043,120 + +0.5 2,043,143 - +0.8 2,043,254 + +0.6 2,043,256 + -0.5 2,043,256 + +0.3 2,043,264 - -0.2 2,043,264 - +0.9 2,043,363 - -0.1 2,043,438 - -0.9 2,043,512 + Shewana3_1735 0.17 -1.5 2,043,512 + Shewana3_1735 0.17 +2.1 2,044,243 - +0.5 2,044,450 + +2.7 2,044,563 + Shewana3_1736 0.11 -1.8 2,044,600 + Shewana3_1736 0.12 -0.5 2,044,600 + Shewana3_1736 0.12 -1.2 2,044,600 + Shewana3_1736 0.12 -1.4 2,044,832 + Shewana3_1736 0.22 -0.7 2,044,847 + Shewana3_1736 0.23 +1.1 2,044,855 - Shewana3_1736 0.23 +0.3 2,044,933 + Shewana3_1736 0.26 -0.1 2,045,094 + Shewana3_1736 0.33 -0.4
Or see this region's nucleotide sequence