Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1735
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,042,421 | - | Shewana3_1734 | 0.28 | +2.7 | |
2,042,651 | + | Shewana3_1734 | 0.49 | +0.8 | |
2,042,691 | - | Shewana3_1734 | 0.53 | +1.7 | |
2,042,710 | + | Shewana3_1734 | 0.55 | +0.1 | |
2,042,951 | + | Shewana3_1734 | 0.77 | +0.1 | |
2,042,978 | + | Shewana3_1734 | 0.80 | +0.9 | |
2,043,032 | + | Shewana3_1734 | 0.85 | +1.5 | |
2,043,120 | + | +0.5 | |||
2,043,143 | - | +0.8 | |||
2,043,254 | + | +0.6 | |||
2,043,256 | + | -0.5 | |||
2,043,256 | + | +0.3 | |||
2,043,264 | - | -0.2 | |||
2,043,264 | - | +0.9 | |||
2,043,363 | - | -0.1 | |||
2,043,438 | - | -0.9 | |||
2,043,512 | + | Shewana3_1735 | 0.17 | -1.5 | |
2,043,512 | + | Shewana3_1735 | 0.17 | +2.1 | |
2,044,243 | - | +0.5 | |||
2,044,450 | + | +2.7 | |||
2,044,563 | + | Shewana3_1736 | 0.11 | -1.8 | |
2,044,600 | + | Shewana3_1736 | 0.12 | -0.5 | |
2,044,600 | + | Shewana3_1736 | 0.12 | -1.2 | |
2,044,600 | + | Shewana3_1736 | 0.12 | -1.4 | |
2,044,832 | + | Shewana3_1736 | 0.22 | -0.7 | |
2,044,847 | + | Shewana3_1736 | 0.23 | +1.1 | |
2,044,855 | - | Shewana3_1736 | 0.23 | +0.3 | |
2,044,933 | + | Shewana3_1736 | 0.26 | -0.1 | |
2,045,094 | + | Shewana3_1736 | 0.33 | -0.4 |
Or see this region's nucleotide sequence