Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cysB and Shewana3_1732 are separated by 81 nucleotides Shewana3_1732 and Shewana3_1733 are separated by 221 nucleotides Shewana3_1733 and Shewana3_1734 are separated by 150 nucleotides
Shewana3_1731: cysB - transcriptional regulator CysB (RefSeq), at 2,039,604 to 2,040,578
cysB
Shewana3_1732: Shewana3_1732 - two component LuxR family transcriptional regulator (RefSeq), at 2,040,660 to 2,041,322
_1732
Shewana3_1733: Shewana3_1733 - thioesterase superfamily protein (RefSeq), at 2,041,544 to 2,041,975
_1733
Shewana3_1734: Shewana3_1734 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 2,042,126 to 2,043,190
_1734
Position (kb)
2041
2042 Strain fitness (log2 ratio)
-1
0
1
2 at 2040.828 kb on + strand, within Shewana3_1732 at 2040.846 kb on - strand, within Shewana3_1732 at 2040.965 kb on - strand, within Shewana3_1732 at 2041.079 kb on + strand, within Shewana3_1732 at 2041.087 kb on - strand, within Shewana3_1732 at 2041.179 kb on + strand, within Shewana3_1732 at 2041.511 kb on - strand at 2041.680 kb on + strand, within Shewana3_1733 at 2041.829 kb on + strand, within Shewana3_1733 at 2041.847 kb on + strand, within Shewana3_1733 at 2041.932 kb on - strand at 2041.990 kb on - strand at 2042.168 kb on - strand at 2042.421 kb on - strand, within Shewana3_1734 at 2042.651 kb on + strand, within Shewana3_1734 at 2042.691 kb on - strand, within Shewana3_1734 at 2042.710 kb on + strand, within Shewana3_1734 at 2042.951 kb on + strand, within Shewana3_1734
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,040,828 + Shewana3_1732 0.25 -0.5 2,040,846 - Shewana3_1732 0.28 +0.5 2,040,965 - Shewana3_1732 0.46 +0.7 2,041,079 + Shewana3_1732 0.63 -0.3 2,041,087 - Shewana3_1732 0.64 -0.2 2,041,179 + Shewana3_1732 0.78 +0.8 2,041,511 - -0.8 2,041,680 + Shewana3_1733 0.31 +1.1 2,041,829 + Shewana3_1733 0.66 -1.1 2,041,847 + Shewana3_1733 0.70 +0.1 2,041,932 - +0.2 2,041,990 - +1.5 2,042,168 - +1.6 2,042,421 - Shewana3_1734 0.28 +2.7 2,042,651 + Shewana3_1734 0.49 +0.8 2,042,691 - Shewana3_1734 0.53 +1.7 2,042,710 + Shewana3_1734 0.55 +0.1 2,042,951 + Shewana3_1734 0.77 +0.1
Or see this region's nucleotide sequence