Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1699

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1698 and Shewana3_1699 are separated by 342 nucleotidesShewana3_1699 and Shewana3_1700 are separated by 155 nucleotidesShewana3_1700 and Shewana3_1701 are separated by 268 nucleotides Shewana3_1698: Shewana3_1698 - AraC family transcriptional regulator (RefSeq), at 1,995,884 to 1,996,792 _1698 Shewana3_1699: Shewana3_1699 - MATE efflux family protein (RefSeq), at 1,997,135 to 1,998,697 _1699 Shewana3_1700: Shewana3_1700 - hypothetical protein (RefSeq), at 1,998,853 to 1,999,071 _1700 Shewana3_1701: Shewana3_1701 - hypothetical protein (RefSeq), at 1,999,340 to 1,999,672 _1701 Position (kb) 1997 1998 1999Strain fitness (log2 ratio) -2 -1 0 1 2at 1996.546 kb on - strand, within Shewana3_1698at 1997.196 kb on - strandat 1997.413 kb on + strand, within Shewana3_1699at 1997.435 kb on + strand, within Shewana3_1699at 1997.445 kb on + strand, within Shewana3_1699at 1997.465 kb on - strand, within Shewana3_1699at 1997.592 kb on + strand, within Shewana3_1699at 1998.154 kb on + strand, within Shewana3_1699at 1998.282 kb on + strand, within Shewana3_1699at 1998.376 kb on - strand, within Shewana3_1699at 1998.383 kb on + strand, within Shewana3_1699at 1998.391 kb on - strand, within Shewana3_1699at 1998.406 kb on + strand, within Shewana3_1699at 1998.452 kb on + strand, within Shewana3_1699at 1998.516 kb on - strand, within Shewana3_1699at 1998.516 kb on - strand, within Shewana3_1699at 1998.817 kb on + strandat 1998.858 kb on - strandat 1998.865 kb on + strandat 1998.871 kb on - strandat 1998.981 kb on + strand, within Shewana3_1700at 1998.981 kb on + strand, within Shewana3_1700at 1999.037 kb on + strand, within Shewana3_1700at 1999.553 kb on - strand, within Shewana3_1701at 1999.606 kb on - strand, within Shewana3_1701

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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1,996,546 - Shewana3_1698 0.73 +1.2
1,997,196 - -1.0
1,997,413 + Shewana3_1699 0.18 -0.5
1,997,435 + Shewana3_1699 0.19 +0.1
1,997,445 + Shewana3_1699 0.20 +1.3
1,997,465 - Shewana3_1699 0.21 +1.6
1,997,592 + Shewana3_1699 0.29 -1.9
1,998,154 + Shewana3_1699 0.65 +0.5
1,998,282 + Shewana3_1699 0.73 +0.0
1,998,376 - Shewana3_1699 0.79 -0.9
1,998,383 + Shewana3_1699 0.80 -0.6
1,998,391 - Shewana3_1699 0.80 +2.1
1,998,406 + Shewana3_1699 0.81 -0.9
1,998,452 + Shewana3_1699 0.84 +0.4
1,998,516 - Shewana3_1699 0.88 +1.6
1,998,516 - Shewana3_1699 0.88 +0.3
1,998,817 + +1.6
1,998,858 - -0.5
1,998,865 + +1.6
1,998,871 - -0.3
1,998,981 + Shewana3_1700 0.58 -0.9
1,998,981 + Shewana3_1700 0.58 +1.6
1,999,037 + Shewana3_1700 0.84 +0.8
1,999,553 - Shewana3_1701 0.64 +0.6
1,999,606 - Shewana3_1701 0.80 +0.8

Or see this region's nucleotide sequence