Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1690 and Shewana3_1691 are separated by 84 nucleotides Shewana3_1691 and Shewana3_1692 are separated by 212 nucleotides
Shewana3_1690: Shewana3_1690 - protease domain-containing protein (RefSeq), at 1,985,098 to 1,989,000
_1690
Shewana3_1691: Shewana3_1691 - LysR family transcriptional regulator (RefSeq), at 1,989,085 to 1,989,966
_1691
Shewana3_1692: Shewana3_1692 - Xaa-His dipeptidase (RefSeq), at 1,990,179 to 1,991,489
_1692
Position (kb)
1989
1990 Strain fitness (log2 ratio)
-2
-1
0
1 at 1988.086 kb on + strand, within Shewana3_1690 at 1988.135 kb on - strand, within Shewana3_1690 at 1988.301 kb on - strand, within Shewana3_1690 at 1988.396 kb on - strand, within Shewana3_1690 at 1988.409 kb on + strand, within Shewana3_1690 at 1988.506 kb on + strand, within Shewana3_1690 at 1988.516 kb on + strand, within Shewana3_1690 at 1988.938 kb on + strand at 1989.439 kb on + strand, within Shewana3_1691 at 1989.712 kb on - strand, within Shewana3_1691 at 1989.876 kb on - strand, within Shewana3_1691 at 1989.895 kb on - strand at 1989.895 kb on - strand at 1989.987 kb on + strand at 1990.047 kb on + strand at 1990.047 kb on + strand at 1990.068 kb on + strand at 1990.073 kb on + strand at 1990.081 kb on - strand at 1990.191 kb on + strand at 1990.199 kb on - strand at 1990.322 kb on + strand, within Shewana3_1692 at 1990.335 kb on - strand, within Shewana3_1692 at 1990.479 kb on - strand, within Shewana3_1692 at 1990.637 kb on + strand, within Shewana3_1692 at 1990.938 kb on + strand, within Shewana3_1692
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,988,086 + Shewana3_1690 0.77 -0.3 1,988,135 - Shewana3_1690 0.78 +0.3 1,988,301 - Shewana3_1690 0.82 -1.1 1,988,396 - Shewana3_1690 0.84 -1.5 1,988,409 + Shewana3_1690 0.85 -1.5 1,988,506 + Shewana3_1690 0.87 +1.1 1,988,516 + Shewana3_1690 0.88 +0.2 1,988,938 + +0.3 1,989,439 + Shewana3_1691 0.40 -0.0 1,989,712 - Shewana3_1691 0.71 +0.6 1,989,876 - Shewana3_1691 0.90 -0.0 1,989,895 - -0.0 1,989,895 - +1.2 1,989,987 + -0.0 1,990,047 + +1.0 1,990,047 + +0.8 1,990,068 + -0.5 1,990,073 + -1.1 1,990,081 - -0.2 1,990,191 + +1.2 1,990,199 - +0.6 1,990,322 + Shewana3_1692 0.11 -1.2 1,990,335 - Shewana3_1692 0.12 -0.4 1,990,479 - Shewana3_1692 0.23 -1.7 1,990,637 + Shewana3_1692 0.35 -2.0 1,990,938 + Shewana3_1692 0.58 +1.5
Or see this region's nucleotide sequence