Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1686

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1685 and Shewana3_1686 are separated by 152 nucleotidesShewana3_1686 and Shewana3_1687 are separated by 324 nucleotides Shewana3_1685: Shewana3_1685 - extradiol ring-cleavage dioxygenase III subunit B (RefSeq), at 1,979,907 to 1,980,716 _1685 Shewana3_1686: Shewana3_1686 - 1,4-dihydroxy-2-naphtoate prenyltransferase (RefSeq), at 1,980,869 to 1,981,744 _1686 Shewana3_1687: Shewana3_1687 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,982,069 to 1,983,022 _1687 Position (kb) 1980 1981 1982Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1980.050 kb on - strand, within Shewana3_1685at 1980.271 kb on + strand, within Shewana3_1685at 1980.468 kb on - strand, within Shewana3_1685at 1980.468 kb on - strand, within Shewana3_1685at 1980.622 kb on + strand, within Shewana3_1685at 1980.904 kb on - strandat 1981.229 kb on + strand, within Shewana3_1686at 1981.242 kb on + strand, within Shewana3_1686at 1981.444 kb on + strand, within Shewana3_1686at 1981.494 kb on - strand, within Shewana3_1686at 1981.618 kb on + strand, within Shewana3_1686at 1981.777 kb on + strandat 1981.999 kb on + strandat 1982.007 kb on - strandat 1982.007 kb on - strandat 1982.187 kb on - strand, within Shewana3_1687at 1982.550 kb on + strand, within Shewana3_1687at 1982.593 kb on + strand, within Shewana3_1687at 1982.634 kb on + strand, within Shewana3_1687

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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1,980,050 - Shewana3_1685 0.18 +3.1
1,980,271 + Shewana3_1685 0.45 -1.3
1,980,468 - Shewana3_1685 0.69 -0.3
1,980,468 - Shewana3_1685 0.69 -0.2
1,980,622 + Shewana3_1685 0.88 +1.0
1,980,904 - -1.8
1,981,229 + Shewana3_1686 0.41 +1.6
1,981,242 + Shewana3_1686 0.43 +0.6
1,981,444 + Shewana3_1686 0.66 +1.1
1,981,494 - Shewana3_1686 0.71 +2.1
1,981,618 + Shewana3_1686 0.86 +2.1
1,981,777 + +3.1
1,981,999 + -0.8
1,982,007 - +0.3
1,982,007 - +0.1
1,982,187 - Shewana3_1687 0.12 +3.1
1,982,550 + Shewana3_1687 0.50 -1.2
1,982,593 + Shewana3_1687 0.55 -0.6
1,982,634 + Shewana3_1687 0.59 +3.1

Or see this region's nucleotide sequence