Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1673
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,965,152 | + | Shewana3_1672 | 0.42 | +2.1 | |
1,965,173 | + | Shewana3_1672 | 0.44 | +0.6 | |
1,965,182 | + | Shewana3_1672 | 0.45 | -0.0 | |
1,965,359 | + | Shewana3_1672 | 0.60 | -1.8 | |
1,965,504 | - | Shewana3_1672 | 0.72 | +1.4 | |
1,965,530 | + | Shewana3_1672 | 0.75 | +1.7 | |
1,965,530 | + | Shewana3_1672 | 0.75 | -1.2 | |
1,965,612 | + | Shewana3_1672 | 0.82 | -0.7 | |
1,965,810 | + | -0.2 | |||
1,965,810 | + | +0.1 | |||
1,965,848 | - | -0.9 | |||
1,965,896 | + | -2.3 | |||
1,965,904 | - | -1.4 | |||
1,965,904 | - | -1.4 | |||
1,965,978 | + | +0.4 | |||
1,966,062 | - | Shewana3_1673 | 0.20 | -1.7 | |
1,966,125 | - | Shewana3_1673 | 0.36 | -0.8 | |
1,966,125 | - | Shewana3_1673 | 0.36 | -2.4 | |
1,966,219 | - | Shewana3_1673 | 0.59 | -2.0 | |
1,966,219 | - | Shewana3_1673 | 0.59 | -1.8 | |
1,966,219 | - | Shewana3_1673 | 0.59 | -0.9 | |
1,966,241 | - | Shewana3_1673 | 0.64 | -0.9 | |
1,966,539 | - | +0.8 | |||
1,966,716 | + | -1.1 | |||
1,966,724 | - | +0.2 | |||
1,966,789 | - | +3.9 | |||
1,966,803 | - | -0.2 | |||
1,967,245 | + | Shewana3_1674 | 0.35 | +0.6 |
Or see this region's nucleotide sequence