Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1672 and Shewana3_1673 are separated by 153 nucleotides Shewana3_1673 and Shewana3_1674 are separated by 273 nucleotides
Shewana3_1672: Shewana3_1672 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) , at 1,964,658 to 1,965,827
_1672
Shewana3_1673: Shewana3_1673 - MerR family transcriptional regulator (RefSeq), at 1,965,981 to 1,966,385
_1673
Shewana3_1674: Shewana3_1674 - peptidoglycan binding domain-containing protein (RefSeq), at 1,966,659 to 1,968,341
_1674
Position (kb)
1965
1966
1967 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1965.152 kb on + strand, within Shewana3_1672 at 1965.173 kb on + strand, within Shewana3_1672 at 1965.182 kb on + strand, within Shewana3_1672 at 1965.359 kb on + strand, within Shewana3_1672 at 1965.504 kb on - strand, within Shewana3_1672 at 1965.530 kb on + strand, within Shewana3_1672 at 1965.530 kb on + strand, within Shewana3_1672 at 1965.612 kb on + strand, within Shewana3_1672 at 1965.810 kb on + strand at 1965.810 kb on + strand at 1965.848 kb on - strand at 1965.896 kb on + strand at 1965.904 kb on - strand at 1965.904 kb on - strand at 1965.978 kb on + strand at 1966.062 kb on - strand, within Shewana3_1673 at 1966.125 kb on - strand, within Shewana3_1673 at 1966.125 kb on - strand, within Shewana3_1673 at 1966.219 kb on - strand, within Shewana3_1673 at 1966.219 kb on - strand, within Shewana3_1673 at 1966.219 kb on - strand, within Shewana3_1673 at 1966.241 kb on - strand, within Shewana3_1673 at 1966.539 kb on - strand at 1966.716 kb on + strand at 1966.724 kb on - strand at 1966.789 kb on - strand at 1966.803 kb on - strand at 1967.245 kb on + strand, within Shewana3_1674
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,965,152 + Shewana3_1672 0.42 +2.1 1,965,173 + Shewana3_1672 0.44 +0.6 1,965,182 + Shewana3_1672 0.45 -0.0 1,965,359 + Shewana3_1672 0.60 -1.8 1,965,504 - Shewana3_1672 0.72 +1.4 1,965,530 + Shewana3_1672 0.75 +1.7 1,965,530 + Shewana3_1672 0.75 -1.2 1,965,612 + Shewana3_1672 0.82 -0.7 1,965,810 + -0.2 1,965,810 + +0.1 1,965,848 - -0.9 1,965,896 + -2.3 1,965,904 - -1.4 1,965,904 - -1.4 1,965,978 + +0.4 1,966,062 - Shewana3_1673 0.20 -1.7 1,966,125 - Shewana3_1673 0.36 -0.8 1,966,125 - Shewana3_1673 0.36 -2.4 1,966,219 - Shewana3_1673 0.59 -2.0 1,966,219 - Shewana3_1673 0.59 -1.8 1,966,219 - Shewana3_1673 0.59 -0.9 1,966,241 - Shewana3_1673 0.64 -0.9 1,966,539 - +0.8 1,966,716 + -1.1 1,966,724 - +0.2 1,966,789 - +3.9 1,966,803 - -0.2 1,967,245 + Shewana3_1674 0.35 +0.6
Or see this region's nucleotide sequence