Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1658

Experiment: Paraquat dichloride 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1657 and Shewana3_1658 are separated by 370 nucleotidesShewana3_1658 and Shewana3_1659 overlap by 4 nucleotides Shewana3_1657: Shewana3_1657 - NlpB/DapX family lipoprotein (RefSeq), at 1,947,167 to 1,948,264 _1657 Shewana3_1658: Shewana3_1658 - RND family efflux transporter MFP subunit (RefSeq), at 1,948,635 to 1,949,717 _1658 Shewana3_1659: Shewana3_1659 - acriflavin resistance protein (RefSeq), at 1,949,714 to 1,952,809 _1659 Position (kb) 1948 1949 1950Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1947.959 kb on + strand, within Shewana3_1657at 1947.968 kb on + strand, within Shewana3_1657at 1948.700 kb on + strandat 1948.743 kb on - strandat 1948.785 kb on + strand, within Shewana3_1658at 1948.952 kb on + strand, within Shewana3_1658at 1949.071 kb on + strand, within Shewana3_1658at 1949.078 kb on - strand, within Shewana3_1658at 1949.150 kb on - strand, within Shewana3_1658at 1949.222 kb on - strand, within Shewana3_1658at 1949.858 kb on + strandat 1950.133 kb on + strand, within Shewana3_1659at 1950.146 kb on - strand, within Shewana3_1659at 1950.162 kb on + strand, within Shewana3_1659at 1950.162 kb on + strand, within Shewana3_1659at 1950.162 kb on + strand, within Shewana3_1659at 1950.170 kb on - strand, within Shewana3_1659at 1950.170 kb on - strand, within Shewana3_1659at 1950.170 kb on - strand, within Shewana3_1659at 1950.430 kb on - strand, within Shewana3_1659at 1950.510 kb on + strand, within Shewana3_1659at 1950.566 kb on - strand, within Shewana3_1659at 1950.566 kb on - strand, within Shewana3_1659at 1950.599 kb on - strand, within Shewana3_1659

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
remove
1,947,959 + Shewana3_1657 0.72 +0.8
1,947,968 + Shewana3_1657 0.73 +0.7
1,948,700 + +3.1
1,948,743 - +2.1
1,948,785 + Shewana3_1658 0.14 +1.1
1,948,952 + Shewana3_1658 0.29 +3.1
1,949,071 + Shewana3_1658 0.40 -1.2
1,949,078 - Shewana3_1658 0.41 -1.4
1,949,150 - Shewana3_1658 0.48 +1.6
1,949,222 - Shewana3_1658 0.54 -0.8
1,949,858 + +1.1
1,950,133 + Shewana3_1659 0.14 +1.0
1,950,146 - Shewana3_1659 0.14 -1.8
1,950,162 + Shewana3_1659 0.14 +0.6
1,950,162 + Shewana3_1659 0.14 +1.2
1,950,162 + Shewana3_1659 0.14 -1.0
1,950,170 - Shewana3_1659 0.15 +0.8
1,950,170 - Shewana3_1659 0.15 +0.2
1,950,170 - Shewana3_1659 0.15 +0.8
1,950,430 - Shewana3_1659 0.23 +0.8
1,950,510 + Shewana3_1659 0.26 +0.6
1,950,566 - Shewana3_1659 0.28 +1.6
1,950,566 - Shewana3_1659 0.28 +0.1
1,950,599 - Shewana3_1659 0.29 -0.5

Or see this region's nucleotide sequence