Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1658
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,947,959 | + | Shewana3_1657 | 0.72 | +0.8 | |
1,947,968 | + | Shewana3_1657 | 0.73 | +0.7 | |
1,948,700 | + | +3.1 | |||
1,948,743 | - | +2.1 | |||
1,948,785 | + | Shewana3_1658 | 0.14 | +1.1 | |
1,948,952 | + | Shewana3_1658 | 0.29 | +3.1 | |
1,949,071 | + | Shewana3_1658 | 0.40 | -1.2 | |
1,949,078 | - | Shewana3_1658 | 0.41 | -1.4 | |
1,949,150 | - | Shewana3_1658 | 0.48 | +1.6 | |
1,949,222 | - | Shewana3_1658 | 0.54 | -0.8 | |
1,949,858 | + | +1.1 | |||
1,950,133 | + | Shewana3_1659 | 0.14 | +1.0 | |
1,950,146 | - | Shewana3_1659 | 0.14 | -1.8 | |
1,950,162 | + | Shewana3_1659 | 0.14 | +0.6 | |
1,950,162 | + | Shewana3_1659 | 0.14 | +1.2 | |
1,950,162 | + | Shewana3_1659 | 0.14 | -1.0 | |
1,950,170 | - | Shewana3_1659 | 0.15 | +0.8 | |
1,950,170 | - | Shewana3_1659 | 0.15 | +0.2 | |
1,950,170 | - | Shewana3_1659 | 0.15 | +0.8 | |
1,950,430 | - | Shewana3_1659 | 0.23 | +0.8 | |
1,950,510 | + | Shewana3_1659 | 0.26 | +0.6 | |
1,950,566 | - | Shewana3_1659 | 0.28 | +1.6 | |
1,950,566 | - | Shewana3_1659 | 0.28 | +0.1 | |
1,950,599 | - | Shewana3_1659 | 0.29 | -0.5 |
Or see this region's nucleotide sequence