Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1649 and Shewana3_1650 are separated by 112 nucleotides Shewana3_1650 and Shewana3_1651 are separated by 208 nucleotides Shewana3_1651 and Shewana3_1652 are separated by 111 nucleotides
Shewana3_1649: Shewana3_1649 - peptidase M48, Ste24p (RefSeq), at 1,940,023 to 1,941,492
_1649
Shewana3_1650: Shewana3_1650 - SirA family protein (RefSeq), at 1,941,605 to 1,941,838
_1650
Shewana3_1651: Shewana3_1651 - hypothetical protein (RefSeq), at 1,942,047 to 1,943,147
_1651
Shewana3_1652: Shewana3_1652 - chromosome replication initiation inhibitor protein (RefSeq), at 1,943,259 to 1,944,176
_1652
Position (kb)
1942
1943
1944 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1941.048 kb on - strand, within Shewana3_1649 at 1941.136 kb on + strand, within Shewana3_1649 at 1941.141 kb on - strand, within Shewana3_1649 at 1941.371 kb on + strand at 1941.949 kb on + strand at 1941.965 kb on - strand at 1941.971 kb on + strand at 1942.137 kb on + strand at 1942.293 kb on + strand, within Shewana3_1651 at 1942.293 kb on + strand, within Shewana3_1651 at 1942.423 kb on + strand, within Shewana3_1651 at 1942.696 kb on + strand, within Shewana3_1651 at 1942.743 kb on + strand, within Shewana3_1651 at 1942.787 kb on - strand, within Shewana3_1651 at 1943.072 kb on + strand at 1943.128 kb on - strand at 1943.141 kb on + strand at 1943.244 kb on + strand at 1943.244 kb on + strand at 1943.304 kb on + strand at 1943.447 kb on + strand, within Shewana3_1652 at 1943.571 kb on - strand, within Shewana3_1652 at 1943.785 kb on + strand, within Shewana3_1652 at 1943.793 kb on - strand, within Shewana3_1652 at 1944.062 kb on + strand, within Shewana3_1652
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,941,048 - Shewana3_1649 0.70 +0.9 1,941,136 + Shewana3_1649 0.76 -1.3 1,941,141 - Shewana3_1649 0.76 +1.6 1,941,371 + +0.4 1,941,949 + -0.0 1,941,965 - +2.2 1,941,971 + +0.4 1,942,137 + -1.1 1,942,293 + Shewana3_1651 0.22 -0.7 1,942,293 + Shewana3_1651 0.22 -2.2 1,942,423 + Shewana3_1651 0.34 +3.2 1,942,696 + Shewana3_1651 0.59 -0.4 1,942,743 + Shewana3_1651 0.63 -0.4 1,942,787 - Shewana3_1651 0.67 -1.7 1,943,072 + -1.1 1,943,128 - +0.2 1,943,141 + -0.3 1,943,244 + -0.0 1,943,244 + +0.6 1,943,304 + +1.6 1,943,447 + Shewana3_1652 0.20 -0.3 1,943,571 - Shewana3_1652 0.34 -0.0 1,943,785 + Shewana3_1652 0.57 +2.1 1,943,793 - Shewana3_1652 0.58 -0.7 1,944,062 + Shewana3_1652 0.87 +0.7
Or see this region's nucleotide sequence