Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1638

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1637 and Shewana3_1638 are separated by 59 nucleotidesShewana3_1638 and Shewana3_1639 are separated by 251 nucleotides Shewana3_1637: Shewana3_1637 - hypothetical protein (RefSeq), at 1,927,234 to 1,928,508 _1637 Shewana3_1638: Shewana3_1638 - putative serine protein kinase, PrkA (RefSeq), at 1,928,568 to 1,930,502 _1638 Shewana3_1639: Shewana3_1639 - manganese and iron superoxide dismutase (RefSeq), at 1,930,754 to 1,931,338 _1639 Position (kb) 1928 1929 1930 1931Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1927.630 kb on + strand, within Shewana3_1637at 1927.758 kb on - strand, within Shewana3_1637at 1927.853 kb on + strand, within Shewana3_1637at 1928.147 kb on - strand, within Shewana3_1637at 1928.287 kb on - strand, within Shewana3_1637at 1928.319 kb on - strand, within Shewana3_1637at 1928.778 kb on + strand, within Shewana3_1638at 1929.165 kb on + strand, within Shewana3_1638at 1929.320 kb on + strand, within Shewana3_1638at 1929.328 kb on - strand, within Shewana3_1638at 1929.335 kb on - strand, within Shewana3_1638at 1929.358 kb on - strand, within Shewana3_1638at 1929.441 kb on + strand, within Shewana3_1638at 1929.589 kb on + strand, within Shewana3_1638at 1929.616 kb on + strand, within Shewana3_1638at 1929.643 kb on - strandat 1929.684 kb on + strand, within Shewana3_1638at 1929.692 kb on - strand, within Shewana3_1638at 1929.750 kb on - strand, within Shewana3_1638at 1929.888 kb on + strand, within Shewana3_1638at 1929.907 kb on + strand, within Shewana3_1638at 1930.162 kb on + strand, within Shewana3_1638at 1930.210 kb on - strand, within Shewana3_1638at 1930.444 kb on + strandat 1930.509 kb on - strandat 1930.759 kb on - strandat 1930.759 kb on - strandat 1931.392 kb on + strandat 1931.480 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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1,927,630 + Shewana3_1637 0.31 +0.8
1,927,758 - Shewana3_1637 0.41 -0.6
1,927,853 + Shewana3_1637 0.49 +1.2
1,928,147 - Shewana3_1637 0.72 -0.4
1,928,287 - Shewana3_1637 0.83 -1.2
1,928,319 - Shewana3_1637 0.85 +0.1
1,928,778 + Shewana3_1638 0.11 +0.6
1,929,165 + Shewana3_1638 0.31 -1.0
1,929,320 + Shewana3_1638 0.39 +2.2
1,929,328 - Shewana3_1638 0.39 -0.2
1,929,335 - Shewana3_1638 0.40 +0.8
1,929,358 - Shewana3_1638 0.41 +0.8
1,929,441 + Shewana3_1638 0.45 +0.8
1,929,589 + Shewana3_1638 0.53 -0.0
1,929,616 + Shewana3_1638 0.54 -0.4
1,929,643 - +1.6
1,929,684 + Shewana3_1638 0.58 -1.2
1,929,692 - Shewana3_1638 0.58 +3.2
1,929,750 - Shewana3_1638 0.61 +2.2
1,929,888 + Shewana3_1638 0.68 -1.0
1,929,907 + Shewana3_1638 0.69 +1.2
1,930,162 + Shewana3_1638 0.82 +0.8
1,930,210 - Shewana3_1638 0.85 +1.2
1,930,444 + -0.3
1,930,509 - +1.2
1,930,759 - +0.7
1,930,759 - -2.6
1,931,392 + -1.7
1,931,480 - -0.7

Or see this region's nucleotide sequence