Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1626

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1625 and Shewana3_1626 are separated by 227 nucleotidesShewana3_1626 and Shewana3_1627 are separated by 18 nucleotidesShewana3_1627 and Shewana3_1628 are separated by 151 nucleotides Shewana3_1625: Shewana3_1625 - S-adenosylmethionine decarboxylase (RefSeq), at 1,914,094 to 1,915,029 _1625 Shewana3_1626: Shewana3_1626 - pyridoxamine 5'-phosphate oxidase (RefSeq), at 1,915,257 to 1,915,895 _1626 Shewana3_1627: Shewana3_1627 - hypothetical protein (RefSeq), at 1,915,914 to 1,916,366 _1627 Shewana3_1628: Shewana3_1628 - YceI family protein (RefSeq), at 1,916,518 to 1,917,093 _1628 Position (kb) 1915 1916Strain fitness (log2 ratio) -1 0 1 2at 1914.371 kb on - strand, within Shewana3_1625at 1914.473 kb on - strand, within Shewana3_1625at 1914.884 kb on + strand, within Shewana3_1625at 1914.892 kb on - strand, within Shewana3_1625at 1914.922 kb on - strand, within Shewana3_1625at 1914.939 kb on + strandat 1914.982 kb on - strandat 1914.982 kb on - strandat 1915.904 kb on + strandat 1915.920 kb on - strandat 1915.922 kb on + strandat 1916.732 kb on + strand, within Shewana3_1628at 1916.745 kb on + strand, within Shewana3_1628at 1916.850 kb on + strand, within Shewana3_1628at 1916.850 kb on + strand, within Shewana3_1628at 1916.858 kb on - strand, within Shewana3_1628

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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1,914,371 - Shewana3_1625 0.30 -0.1
1,914,473 - Shewana3_1625 0.40 +0.3
1,914,884 + Shewana3_1625 0.84 +1.4
1,914,892 - Shewana3_1625 0.85 +1.4
1,914,922 - Shewana3_1625 0.88 +0.0
1,914,939 + -0.4
1,914,982 - +2.2
1,914,982 - -1.2
1,915,904 + +2.3
1,915,920 - +0.9
1,915,922 + -0.3
1,916,732 + Shewana3_1628 0.37 -0.1
1,916,745 + Shewana3_1628 0.39 -0.3
1,916,850 + Shewana3_1628 0.58 +0.6
1,916,850 + Shewana3_1628 0.58 +0.5
1,916,858 - Shewana3_1628 0.59 +2.2

Or see this region's nucleotide sequence