Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1514

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1513 and Shewana3_1514 are separated by 268 nucleotidesShewana3_1514 and trpA are separated by 96 nucleotidestrpA and Shewana3_1516 are separated by 5 nucleotides Shewana3_1513: Shewana3_1513 - TonB-dependent receptor (RefSeq), at 1,761,659 to 1,763,608 _1513 Shewana3_1514: Shewana3_1514 - putative esterase (RefSeq), at 1,763,877 to 1,764,932 _1514 Shewana3_1515: trpA - tryptophan synthase subunit alpha (RefSeq), at 1,765,029 to 1,765,865 trpA Shewana3_1516: Shewana3_1516 - tryptophan synthase subunit beta (RefSeq), at 1,765,871 to 1,767,061 _1516 Position (kb) 1763 1764 1765Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 1762.908 kb on - strand, within Shewana3_1513at 1762.978 kb on + strand, within Shewana3_1513at 1762.986 kb on - strand, within Shewana3_1513at 1762.986 kb on - strand, within Shewana3_1513at 1763.213 kb on + strand, within Shewana3_1513at 1763.285 kb on + strand, within Shewana3_1513at 1763.285 kb on + strand, within Shewana3_1513at 1763.339 kb on - strand, within Shewana3_1513at 1763.535 kb on - strandat 1763.761 kb on + strandat 1763.793 kb on + strandat 1763.861 kb on - strandat 1764.179 kb on + strand, within Shewana3_1514at 1764.237 kb on - strand, within Shewana3_1514at 1764.297 kb on + strand, within Shewana3_1514at 1764.305 kb on - strand, within Shewana3_1514at 1764.333 kb on - strand, within Shewana3_1514at 1764.630 kb on + strand, within Shewana3_1514at 1764.638 kb on - strand, within Shewana3_1514at 1764.834 kb on + strandat 1764.882 kb on - strandat 1764.926 kb on + strandat 1764.949 kb on + strandat 1765.010 kb on - strandat 1765.316 kb on - strand, within trpAat 1765.398 kb on - strand, within trpAat 1765.497 kb on + strand, within trpAat 1765.618 kb on + strand, within trpAat 1765.633 kb on + strand, within trpAat 1765.633 kb on + strand, within trpAat 1765.769 kb on + strand, within trpAat 1765.860 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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1,762,908 - Shewana3_1513 0.64 +3.2
1,762,978 + Shewana3_1513 0.68 +0.9
1,762,986 - Shewana3_1513 0.68 +1.2
1,762,986 - Shewana3_1513 0.68 -1.4
1,763,213 + Shewana3_1513 0.80 +3.2
1,763,285 + Shewana3_1513 0.83 -1.1
1,763,285 + Shewana3_1513 0.83 +0.6
1,763,339 - Shewana3_1513 0.86 -1.3
1,763,535 - +0.2
1,763,761 + +0.2
1,763,793 + -0.5
1,763,861 - +0.9
1,764,179 + Shewana3_1514 0.29 -0.3
1,764,237 - Shewana3_1514 0.34 +0.7
1,764,297 + Shewana3_1514 0.40 -1.5
1,764,305 - Shewana3_1514 0.41 +0.0
1,764,333 - Shewana3_1514 0.43 +3.2
1,764,630 + Shewana3_1514 0.71 -0.3
1,764,638 - Shewana3_1514 0.72 +2.2
1,764,834 + -0.8
1,764,882 - -1.8
1,764,926 + +1.0
1,764,949 + -2.9
1,765,010 - +7.5
1,765,316 - trpA Shewana3_1515 0.34 -0.9
1,765,398 - trpA Shewana3_1515 0.44 -0.3
1,765,497 + trpA Shewana3_1515 0.56 -2.1
1,765,618 + trpA Shewana3_1515 0.70 +0.3
1,765,633 + trpA Shewana3_1515 0.72 -0.3
1,765,633 + trpA Shewana3_1515 0.72 -0.0
1,765,769 + trpA Shewana3_1515 0.88 -0.4
1,765,860 + +2.2

Or see this region's nucleotide sequence