Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1513 and Shewana3_1514 are separated by 268 nucleotides Shewana3_1514 and trpA are separated by 96 nucleotides trpA and Shewana3_1516 are separated by 5 nucleotides
Shewana3_1513: Shewana3_1513 - TonB-dependent receptor (RefSeq), at 1,761,659 to 1,763,608
_1513
Shewana3_1514: Shewana3_1514 - putative esterase (RefSeq), at 1,763,877 to 1,764,932
_1514
Shewana3_1515: trpA - tryptophan synthase subunit alpha (RefSeq), at 1,765,029 to 1,765,865
trpA
Shewana3_1516: Shewana3_1516 - tryptophan synthase subunit beta (RefSeq), at 1,765,871 to 1,767,061
_1516
Position (kb)
1763
1764
1765 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 1762.908 kb on - strand, within Shewana3_1513 at 1762.978 kb on + strand, within Shewana3_1513 at 1762.986 kb on - strand, within Shewana3_1513 at 1762.986 kb on - strand, within Shewana3_1513 at 1763.213 kb on + strand, within Shewana3_1513 at 1763.285 kb on + strand, within Shewana3_1513 at 1763.285 kb on + strand, within Shewana3_1513 at 1763.339 kb on - strand, within Shewana3_1513 at 1763.535 kb on - strand at 1763.761 kb on + strand at 1763.793 kb on + strand at 1763.861 kb on - strand at 1764.179 kb on + strand, within Shewana3_1514 at 1764.237 kb on - strand, within Shewana3_1514 at 1764.297 kb on + strand, within Shewana3_1514 at 1764.305 kb on - strand, within Shewana3_1514 at 1764.333 kb on - strand, within Shewana3_1514 at 1764.630 kb on + strand, within Shewana3_1514 at 1764.638 kb on - strand, within Shewana3_1514 at 1764.834 kb on + strand at 1764.882 kb on - strand at 1764.926 kb on + strand at 1764.949 kb on + strand at 1765.010 kb on - strand at 1765.316 kb on - strand, within trpA at 1765.398 kb on - strand, within trpA at 1765.497 kb on + strand, within trpA at 1765.618 kb on + strand, within trpA at 1765.633 kb on + strand, within trpA at 1765.633 kb on + strand, within trpA at 1765.769 kb on + strand, within trpA at 1765.860 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,762,908 - Shewana3_1513 0.64 +3.2 1,762,978 + Shewana3_1513 0.68 +0.9 1,762,986 - Shewana3_1513 0.68 +1.2 1,762,986 - Shewana3_1513 0.68 -1.4 1,763,213 + Shewana3_1513 0.80 +3.2 1,763,285 + Shewana3_1513 0.83 -1.1 1,763,285 + Shewana3_1513 0.83 +0.6 1,763,339 - Shewana3_1513 0.86 -1.3 1,763,535 - +0.2 1,763,761 + +0.2 1,763,793 + -0.5 1,763,861 - +0.9 1,764,179 + Shewana3_1514 0.29 -0.3 1,764,237 - Shewana3_1514 0.34 +0.7 1,764,297 + Shewana3_1514 0.40 -1.5 1,764,305 - Shewana3_1514 0.41 +0.0 1,764,333 - Shewana3_1514 0.43 +3.2 1,764,630 + Shewana3_1514 0.71 -0.3 1,764,638 - Shewana3_1514 0.72 +2.2 1,764,834 + -0.8 1,764,882 - -1.8 1,764,926 + +1.0 1,764,949 + -2.9 1,765,010 - +7.5 1,765,316 - trpA Shewana3_1515 0.34 -0.9 1,765,398 - trpA Shewana3_1515 0.44 -0.3 1,765,497 + trpA Shewana3_1515 0.56 -2.1 1,765,618 + trpA Shewana3_1515 0.70 +0.3 1,765,633 + trpA Shewana3_1515 0.72 -0.3 1,765,633 + trpA Shewana3_1515 0.72 -0.0 1,765,769 + trpA Shewana3_1515 0.88 -0.4 1,765,860 + +2.2
Or see this region's nucleotide sequence