Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1505
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,750,919 | + | Shewana3_1503 | 0.30 | -1.7 | |
1,750,919 | + | Shewana3_1503 | 0.30 | +1.2 | |
1,750,919 | + | Shewana3_1503 | 0.30 | +1.2 | |
1,750,919 | + | Shewana3_1503 | 0.30 | -2.0 | |
1,750,927 | - | Shewana3_1503 | 0.31 | -0.3 | |
1,751,052 | - | Shewana3_1503 | 0.46 | -1.1 | |
1,751,182 | - | Shewana3_1503 | 0.62 | +0.1 | |
1,751,262 | - | Shewana3_1503 | 0.72 | -0.8 | |
1,751,276 | + | Shewana3_1503 | 0.74 | +1.2 | |
1,751,284 | + | Shewana3_1503 | 0.75 | +2.2 | |
1,751,568 | + | Shewana3_1504 | 0.27 | +0.0 | |
1,751,576 | - | Shewana3_1504 | 0.30 | -0.3 | |
1,751,576 | - | Shewana3_1504 | 0.30 | +0.3 | |
1,751,576 | - | Shewana3_1504 | 0.30 | -2.1 | |
1,751,666 | - | Shewana3_1504 | 0.60 | -0.2 | |
1,752,398 | + | +0.9 | |||
1,752,490 | + | +0.9 | |||
1,752,498 | - | +0.1 | |||
1,752,498 | - | +1.4 | |||
1,752,498 | - | +0.2 | |||
1,752,657 | - | Shewana3_1506 | 0.16 | -1.3 | |
1,752,772 | + | Shewana3_1506 | 0.27 | -0.3 | |
1,753,022 | + | Shewana3_1506 | 0.51 | +1.6 | |
1,753,074 | + | Shewana3_1506 | 0.56 | -2.0 | |
1,753,110 | + | Shewana3_1506 | 0.60 | +0.3 | |
1,753,123 | + | Shewana3_1506 | 0.61 | -0.5 | |
1,753,131 | - | Shewana3_1506 | 0.62 | +3.2 | |
1,753,215 | - | Shewana3_1506 | 0.70 | +3.2 |
Or see this region's nucleotide sequence