Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1449

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1448 and Shewana3_1449 are separated by 121 nucleotidesShewana3_1449 and Shewana3_1450 are separated by 100 nucleotides Shewana3_1448: Shewana3_1448 - hypothetical protein (RefSeq), at 1,679,600 to 1,680,352 _1448 Shewana3_1449: Shewana3_1449 - hypothetical protein (RefSeq), at 1,680,474 to 1,680,860 _1449 Shewana3_1450: Shewana3_1450 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 1,680,961 to 1,682,247 _1450 Position (kb) 1680 1681Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1679.987 kb on - strand, within Shewana3_1448at 1679.992 kb on - strand, within Shewana3_1448at 1679.993 kb on - strand, within Shewana3_1448at 1680.083 kb on + strand, within Shewana3_1448at 1680.101 kb on - strand, within Shewana3_1448at 1680.112 kb on + strand, within Shewana3_1448at 1680.190 kb on - strand, within Shewana3_1448at 1680.211 kb on - strand, within Shewana3_1448at 1680.232 kb on + strand, within Shewana3_1448at 1680.252 kb on - strand, within Shewana3_1448at 1680.394 kb on - strandat 1680.462 kb on + strandat 1680.488 kb on + strandat 1680.496 kb on - strandat 1680.690 kb on + strand, within Shewana3_1449at 1680.863 kb on + strandat 1680.957 kb on - strandat 1680.958 kb on - strandat 1680.959 kb on + strandat 1680.984 kb on - strandat 1680.989 kb on - strandat 1680.999 kb on - strandat 1681.258 kb on + strand, within Shewana3_1450at 1681.271 kb on - strand, within Shewana3_1450at 1681.301 kb on - strand, within Shewana3_1450at 1681.397 kb on + strand, within Shewana3_1450at 1681.397 kb on + strand, within Shewana3_1450at 1681.397 kb on + strand, within Shewana3_1450at 1681.397 kb on + strand, within Shewana3_1450at 1681.397 kb on + strand, within Shewana3_1450at 1681.397 kb on + strand, within Shewana3_1450at 1681.405 kb on - strand, within Shewana3_1450at 1681.405 kb on - strand, within Shewana3_1450at 1681.405 kb on - strand, within Shewana3_1450at 1681.494 kb on - strand, within Shewana3_1450

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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1,679,987 - Shewana3_1448 0.51 +3.1
1,679,992 - Shewana3_1448 0.52 -1.1
1,679,993 - Shewana3_1448 0.52 -0.1
1,680,083 + Shewana3_1448 0.64 +0.9
1,680,101 - Shewana3_1448 0.67 +0.4
1,680,112 + Shewana3_1448 0.68 +0.8
1,680,190 - Shewana3_1448 0.78 -0.5
1,680,211 - Shewana3_1448 0.81 -1.3
1,680,232 + Shewana3_1448 0.84 +0.5
1,680,252 - Shewana3_1448 0.87 -0.2
1,680,394 - -1.9
1,680,462 + -0.5
1,680,488 + -0.4
1,680,496 - -0.6
1,680,690 + Shewana3_1449 0.56 -1.7
1,680,863 + -0.7
1,680,957 - +0.5
1,680,958 - -0.5
1,680,959 + -0.5
1,680,984 - -1.1
1,680,989 - -0.3
1,680,999 - +0.2
1,681,258 + Shewana3_1450 0.23 +0.5
1,681,271 - Shewana3_1450 0.24 -0.7
1,681,301 - Shewana3_1450 0.26 -0.5
1,681,397 + Shewana3_1450 0.34 +1.9
1,681,397 + Shewana3_1450 0.34 +0.5
1,681,397 + Shewana3_1450 0.34 +0.1
1,681,397 + Shewana3_1450 0.34 +2.1
1,681,397 + Shewana3_1450 0.34 +3.1
1,681,397 + Shewana3_1450 0.34 -0.2
1,681,405 - Shewana3_1450 0.34 -0.3
1,681,405 - Shewana3_1450 0.34 -0.7
1,681,405 - Shewana3_1450 0.34 -0.1
1,681,494 - Shewana3_1450 0.41 +0.2

Or see this region's nucleotide sequence