Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1439 and Shewana3_1440 are separated by 269 nucleotides Shewana3_1440 and Shewana3_1441 are separated by 34 nucleotides Shewana3_1441 and Shewana3_1442 are separated by 86 nucleotides Shewana3_1442 and Shewana3_1443 are separated by 40 nucleotides
Shewana3_1439: Shewana3_1439 - hypothetical protein (RefSeq), at 1,668,865 to 1,669,182
_1439
Shewana3_1440: Shewana3_1440 - rhodanese domain-containing protein (RefSeq), at 1,669,452 to 1,669,811
_1440
Shewana3_1441: Shewana3_1441 - siroheme synthase (RefSeq), at 1,669,846 to 1,670,757
_1441
Shewana3_1442: Shewana3_1442 - YaeQ family protein (RefSeq), at 1,670,844 to 1,671,389
_1442
Shewana3_1443: Shewana3_1443 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 1,671,430 to 1,673,859
_1443
Position (kb) 1669
1670
1671 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 1669.109 kb on + strand, within Shewana3_1439 at 1669.332 kb on - strand at 1669.463 kb on - strand at 1669.489 kb on - strand, within Shewana3_1440 at 1669.636 kb on + strand, within Shewana3_1440 at 1669.995 kb on + strand, within Shewana3_1441 at 1670.242 kb on - strand, within Shewana3_1441 at 1670.320 kb on + strand, within Shewana3_1441 at 1670.360 kb on - strand, within Shewana3_1441 at 1670.801 kb on - strand at 1670.847 kb on - strand at 1671.275 kb on - strand, within Shewana3_1442 at 1671.539 kb on + strand at 1671.661 kb on - strand at 1671.712 kb on + strand, within Shewana3_1443 at 1671.712 kb on + strand, within Shewana3_1443
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,669,109 + Shewana3_1439 0.77 -0.9 1,669,332 - -1.0 1,669,463 - +0.5 1,669,489 - Shewana3_1440 0.10 -0.3 1,669,636 + Shewana3_1440 0.51 +0.5 1,669,995 + Shewana3_1441 0.16 +1.3 1,670,242 - Shewana3_1441 0.43 -0.9 1,670,320 + Shewana3_1441 0.52 -0.4 1,670,360 - Shewana3_1441 0.56 -0.8 1,670,801 - -2.5 1,670,847 - +0.3 1,671,275 - Shewana3_1442 0.79 +3.1 1,671,539 + +7.9 1,671,661 - -0.1 1,671,712 + Shewana3_1443 0.12 +0.3 1,671,712 + Shewana3_1443 0.12 +0.8
Or see this region's nucleotide sequence