Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1436

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttgt and Shewana3_1436 are separated by 83 nucleotidesShewana3_1436 and secD are separated by 17 nucleotides Shewana3_1435: tgt - queuine tRNA-ribosyltransferase (RefSeq), at 1,664,297 to 1,665,421 tgt Shewana3_1436: Shewana3_1436 - protein translocase subunit yajC (RefSeq), at 1,665,505 to 1,665,780 _1436 Shewana3_1437: secD - preprotein translocase subunit SecD (RefSeq), at 1,665,798 to 1,667,648 secD Position (kb) 1665 1666Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1664.512 kb on + strand, within tgtat 1664.552 kb on + strand, within tgtat 1664.771 kb on + strand, within tgtat 1664.785 kb on + strand, within tgtat 1665.238 kb on + strand, within tgtat 1665.265 kb on + strand, within tgtat 1665.628 kb on + strand, within Shewana3_1436at 1665.628 kb on + strand, within Shewana3_1436at 1665.688 kb on + strand, within Shewana3_1436at 1665.790 kb on + strandat 1666.090 kb on + strand, within secDat 1666.108 kb on + strand, within secDat 1666.185 kb on + strand, within secDat 1666.456 kb on + strand, within secDat 1666.573 kb on + strand, within secDat 1666.678 kb on - strand, within secD

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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1,664,512 + tgt Shewana3_1435 0.19 -0.3
1,664,552 + tgt Shewana3_1435 0.23 +0.4
1,664,771 + tgt Shewana3_1435 0.42 -0.2
1,664,785 + tgt Shewana3_1435 0.43 -1.9
1,665,238 + tgt Shewana3_1435 0.84 +1.8
1,665,265 + tgt Shewana3_1435 0.86 +0.3
1,665,628 + Shewana3_1436 0.45 -0.6
1,665,628 + Shewana3_1436 0.45 +0.3
1,665,688 + Shewana3_1436 0.66 +0.5
1,665,790 + -1.0
1,666,090 + secD Shewana3_1437 0.16 -1.3
1,666,108 + secD Shewana3_1437 0.17 +1.8
1,666,185 + secD Shewana3_1437 0.21 -3.3
1,666,456 + secD Shewana3_1437 0.36 +1.5
1,666,573 + secD Shewana3_1437 0.42 -1.9
1,666,678 - secD Shewana3_1437 0.48 +2.1

Or see this region's nucleotide sequence