Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1430 and Shewana3_1431 are separated by 113 nucleotides Shewana3_1431 and Shewana3_1432 are separated by 145 nucleotides Shewana3_1432 and Shewana3_1433 are separated by 182 nucleotides Shewana3_1433 and queA are separated by 64 nucleotides
Shewana3_1430: Shewana3_1430 - pseudouridine synthase (RefSeq), at 1,660,536 to 1,661,207
_1430
Shewana3_1431: Shewana3_1431 - redoxin domain-containing protein (RefSeq), at 1,661,321 to 1,661,875
_1431
Shewana3_1432: Shewana3_1432 - hypothetical protein (RefSeq), at 1,662,021 to 1,662,647
_1432
Shewana3_1433: Shewana3_1433 - hypothetical protein (RefSeq), at 1,662,830 to 1,663,033
_1433
Shewana3_1434: queA - S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq), at 1,663,098 to 1,664,135
queA
Position (kb)
1662
1663 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1661.327 kb on - strand at 1661.327 kb on - strand at 1661.448 kb on + strand, within Shewana3_1431 at 1661.518 kb on - strand, within Shewana3_1431 at 1661.855 kb on - strand at 1661.927 kb on + strand at 1661.941 kb on - strand at 1661.944 kb on + strand at 1662.034 kb on + strand at 1662.280 kb on + strand, within Shewana3_1432 at 1662.292 kb on + strand, within Shewana3_1432 at 1662.293 kb on - strand, within Shewana3_1432 at 1662.300 kb on - strand, within Shewana3_1432 at 1662.420 kb on + strand, within Shewana3_1432 at 1662.464 kb on - strand, within Shewana3_1432 at 1662.493 kb on + strand, within Shewana3_1432 at 1662.501 kb on - strand, within Shewana3_1432 at 1662.530 kb on - strand, within Shewana3_1432 at 1662.770 kb on + strand at 1663.090 kb on - strand at 1663.092 kb on - strand at 1663.179 kb on - strand at 1663.419 kb on - strand, within queA at 1663.432 kb on + strand, within queA
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,661,327 - -1.1 1,661,327 - -0.6 1,661,448 + Shewana3_1431 0.23 +0.3 1,661,518 - Shewana3_1431 0.35 +0.5 1,661,855 - -0.5 1,661,927 + -2.1 1,661,941 - -2.0 1,661,944 + -1.8 1,662,034 + -1.3 1,662,280 + Shewana3_1432 0.41 -0.7 1,662,292 + Shewana3_1432 0.43 +1.4 1,662,293 - Shewana3_1432 0.43 -0.3 1,662,300 - Shewana3_1432 0.44 +0.7 1,662,420 + Shewana3_1432 0.64 -0.1 1,662,464 - Shewana3_1432 0.71 +1.8 1,662,493 + Shewana3_1432 0.75 -0.7 1,662,501 - Shewana3_1432 0.77 -0.6 1,662,530 - Shewana3_1432 0.81 +0.2 1,662,770 + +0.6 1,663,090 - +0.8 1,663,092 - -0.8 1,663,179 - -0.2 1,663,419 - queA Shewana3_1434 0.31 +1.1 1,663,432 + queA Shewana3_1434 0.32 +0.3
Or see this region's nucleotide sequence