Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1412

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1411 and Shewana3_1412 are separated by 125 nucleotidesShewana3_1412 and Shewana3_1413 overlap by 4 nucleotides Shewana3_1411: Shewana3_1411 - hypothetical protein (RefSeq), at 1,632,245 to 1,635,316 _1411 Shewana3_1412: Shewana3_1412 - two component, sigma54 specific, Fis family transcriptional regulator (RefSeq), at 1,635,442 to 1,636,821 _1412 Shewana3_1413: Shewana3_1413 - ATPase domain-containing protein (RefSeq), at 1,636,818 to 1,638,629 _1413 Position (kb) 1635 1636 1637Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 1634.534 kb on - strand, within Shewana3_1411at 1634.770 kb on + strand, within Shewana3_1411at 1634.770 kb on - strand, within Shewana3_1411at 1635.065 kb on + strandat 1635.119 kb on + strandat 1635.540 kb on + strandat 1635.548 kb on - strandat 1635.772 kb on - strand, within Shewana3_1412at 1636.232 kb on - strand, within Shewana3_1412at 1636.331 kb on - strand, within Shewana3_1412at 1636.386 kb on + strand, within Shewana3_1412at 1636.483 kb on + strand, within Shewana3_1412at 1636.819 kb on + strandat 1636.906 kb on - strandat 1636.966 kb on - strandat 1637.072 kb on + strand, within Shewana3_1413at 1637.244 kb on + strand, within Shewana3_1413at 1637.468 kb on + strand, within Shewana3_1413at 1637.529 kb on - strand, within Shewana3_1413at 1637.585 kb on - strand, within Shewana3_1413at 1637.713 kb on + strand, within Shewana3_1413at 1637.774 kb on + strand, within Shewana3_1413

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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1,634,534 - Shewana3_1411 0.75 +1.1
1,634,770 + Shewana3_1411 0.82 +1.2
1,634,770 - Shewana3_1411 0.82 +2.6
1,635,065 + +0.2
1,635,119 + -0.3
1,635,540 + -0.8
1,635,548 - +6.3
1,635,772 - Shewana3_1412 0.24 -2.7
1,636,232 - Shewana3_1412 0.57 +1.5
1,636,331 - Shewana3_1412 0.64 -0.4
1,636,386 + Shewana3_1412 0.68 -1.0
1,636,483 + Shewana3_1412 0.75 -0.7
1,636,819 + +1.5
1,636,906 - -1.4
1,636,966 - -0.1
1,637,072 + Shewana3_1413 0.14 -0.3
1,637,244 + Shewana3_1413 0.24 -0.2
1,637,468 + Shewana3_1413 0.36 -0.1
1,637,529 - Shewana3_1413 0.39 +1.1
1,637,585 - Shewana3_1413 0.42 -1.1
1,637,713 + Shewana3_1413 0.49 -0.3
1,637,774 + Shewana3_1413 0.53 -1.0

Or see this region's nucleotide sequence