Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1399 and Shewana3_1400 are separated by 0 nucleotides Shewana3_1400 and Shewana3_1401 are separated by 94 nucleotides Shewana3_1401 and Shewana3_1402 are separated by 77 nucleotides
Shewana3_1399: Shewana3_1399 - hexapaptide repeat-containing transferase (RefSeq), at 1,615,512 to 1,616,141
_1399
Shewana3_1400: Shewana3_1400 - hypothetical protein (RefSeq), at 1,616,142 to 1,616,876
_1400
Shewana3_1401: Shewana3_1401 - putative lipoprotein (RefSeq), at 1,616,971 to 1,617,351
_1401
Shewana3_1402: Shewana3_1402 - hypothetical protein (RefSeq), at 1,617,429 to 1,618,718
_1402
Position (kb)
1616
1617
1618 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6 at 1616.074 kb on + strand, within Shewana3_1399 at 1616.356 kb on + strand, within Shewana3_1400 at 1616.709 kb on - strand, within Shewana3_1400 at 1616.831 kb on + strand at 1616.955 kb on + strand at 1616.963 kb on - strand at 1617.028 kb on + strand, within Shewana3_1401 at 1617.028 kb on + strand, within Shewana3_1401 at 1617.036 kb on - strand, within Shewana3_1401 at 1617.182 kb on - strand, within Shewana3_1401 at 1617.226 kb on - strand, within Shewana3_1401 at 1617.234 kb on - strand, within Shewana3_1401 at 1617.352 kb on + strand at 1617.387 kb on + strand at 1617.387 kb on + strand at 1617.418 kb on - strand at 1617.551 kb on + strand at 1617.559 kb on - strand, within Shewana3_1402 at 1617.559 kb on - strand, within Shewana3_1402 at 1617.559 kb on - strand, within Shewana3_1402 at 1617.564 kb on - strand, within Shewana3_1402 at 1617.682 kb on + strand, within Shewana3_1402 at 1617.692 kb on + strand, within Shewana3_1402 at 1617.710 kb on - strand, within Shewana3_1402 at 1617.806 kb on + strand, within Shewana3_1402 at 1617.814 kb on - strand, within Shewana3_1402 at 1617.814 kb on - strand, within Shewana3_1402 at 1617.814 kb on - strand, within Shewana3_1402
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,616,074 + Shewana3_1399 0.89 -1.0 1,616,356 + Shewana3_1400 0.29 -0.2 1,616,709 - Shewana3_1400 0.77 +0.3 1,616,831 + -0.4 1,616,955 + -0.4 1,616,963 - +0.2 1,617,028 + Shewana3_1401 0.15 -0.3 1,617,028 + Shewana3_1401 0.15 -0.1 1,617,036 - Shewana3_1401 0.17 -0.9 1,617,182 - Shewana3_1401 0.55 -0.2 1,617,226 - Shewana3_1401 0.67 -0.8 1,617,234 - Shewana3_1401 0.69 -0.4 1,617,352 + -0.5 1,617,387 + -0.5 1,617,387 + -0.8 1,617,418 - -0.4 1,617,551 + -1.6 1,617,559 - Shewana3_1402 0.10 +6.0 1,617,559 - Shewana3_1402 0.10 -0.8 1,617,559 - Shewana3_1402 0.10 -0.6 1,617,564 - Shewana3_1402 0.10 -0.9 1,617,682 + Shewana3_1402 0.20 -1.2 1,617,692 + Shewana3_1402 0.20 +0.3 1,617,710 - Shewana3_1402 0.22 -0.4 1,617,806 + Shewana3_1402 0.29 -1.7 1,617,814 - Shewana3_1402 0.30 +0.1 1,617,814 - Shewana3_1402 0.30 -0.6 1,617,814 - Shewana3_1402 0.30 +0.1
Or see this region's nucleotide sequence