Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1381

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1380 and Shewana3_1381 are separated by 98 nucleotidesShewana3_1381 and Shewana3_1382 are separated by 80 nucleotidesShewana3_1382 and Shewana3_1383 are separated by 117 nucleotides Shewana3_1380: Shewana3_1380 - glucose-1-phosphate thymidylyltransferase (RefSeq), at 1,595,572 to 1,596,432 _1380 Shewana3_1381: Shewana3_1381 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 1,596,531 to 1,597,406 _1381 Shewana3_1382: Shewana3_1382 - dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq), at 1,597,487 to 1,598,038 _1382 Shewana3_1383: Shewana3_1383 - hypothetical protein (RefSeq), at 1,598,156 to 1,599,400 _1383 Position (kb) 1596 1597 1598Strain fitness (log2 ratio) -1 0 1 2at 1596.446 kb on + strandat 1597.377 kb on + strandat 1597.654 kb on + strand, within Shewana3_1382at 1597.719 kb on + strand, within Shewana3_1382at 1597.742 kb on + strand, within Shewana3_1382at 1598.095 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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1,596,446 + -1.3
1,597,377 + -0.4
1,597,654 + Shewana3_1382 0.30 +0.6
1,597,719 + Shewana3_1382 0.42 +2.1
1,597,742 + Shewana3_1382 0.46 +2.1
1,598,095 + -0.3

Or see this region's nucleotide sequence