Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1367 and Shewana3_1368 are separated by 154 nucleotides Shewana3_1368 and Shewana3_1369 are separated by 27 nucleotides Shewana3_1369 and Shewana3_1370 are separated by 12 nucleotides Shewana3_1370 and Shewana3_1371 are separated by 221 nucleotides
Shewana3_1367: Shewana3_1367 - CheW protein (RefSeq), at 1,579,950 to 1,580,444
_1367
Shewana3_1368: Shewana3_1368 - hypothetical protein (RefSeq), at 1,580,599 to 1,580,997
_1368
Shewana3_1369: Shewana3_1369 - FlhB domain-containing protein (RefSeq), at 1,581,025 to 1,581,336
_1369
Shewana3_1370: Shewana3_1370 - hypothetical protein (RefSeq), at 1,581,349 to 1,583,400
_1370
Shewana3_1371: Shewana3_1371 - VacJ family lipoprotein (RefSeq), at 1,583,622 to 1,584,407
_1371
Position (kb)
1581
1582
1583
1584 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1580.446 kb on - strand at 1580.481 kb on - strand at 1580.623 kb on + strand at 1580.623 kb on + strand at 1580.653 kb on - strand, within Shewana3_1368 at 1580.881 kb on + strand, within Shewana3_1368 at 1580.889 kb on - strand, within Shewana3_1368 at 1581.108 kb on + strand, within Shewana3_1369 at 1581.116 kb on - strand, within Shewana3_1369 at 1581.439 kb on + strand at 1581.683 kb on + strand, within Shewana3_1370 at 1581.854 kb on - strand, within Shewana3_1370 at 1582.130 kb on - strand, within Shewana3_1370 at 1582.136 kb on + strand, within Shewana3_1370 at 1582.575 kb on - strand, within Shewana3_1370 at 1582.646 kb on + strand, within Shewana3_1370 at 1582.750 kb on + strand, within Shewana3_1370 at 1582.923 kb on - strand, within Shewana3_1370 at 1582.925 kb on + strand, within Shewana3_1370 at 1582.933 kb on - strand, within Shewana3_1370 at 1583.039 kb on + strand, within Shewana3_1370 at 1583.118 kb on + strand, within Shewana3_1370 at 1583.118 kb on + strand, within Shewana3_1370 at 1583.126 kb on - strand, within Shewana3_1370 at 1583.126 kb on - strand, within Shewana3_1370 at 1583.126 kb on - strand, within Shewana3_1370 at 1583.260 kb on + strand at 1583.530 kb on - strand at 1583.584 kb on + strand at 1583.594 kb on + strand at 1583.675 kb on + strand at 1583.680 kb on + strand at 1583.688 kb on - strand at 1583.714 kb on + strand, within Shewana3_1371 at 1583.714 kb on + strand, within Shewana3_1371 at 1584.066 kb on + strand, within Shewana3_1371 at 1584.066 kb on + strand, within Shewana3_1371 at 1584.122 kb on + strand, within Shewana3_1371 at 1584.192 kb on + strand, within Shewana3_1371 at 1584.285 kb on + strand, within Shewana3_1371 at 1584.287 kb on + strand, within Shewana3_1371 at 1584.392 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,580,446 - +2.1 1,580,481 - +0.3 1,580,623 + +1.6 1,580,623 + +1.3 1,580,653 - Shewana3_1368 0.14 -0.0 1,580,881 + Shewana3_1368 0.71 +1.1 1,580,889 - Shewana3_1368 0.73 -0.0 1,581,108 + Shewana3_1369 0.27 +0.5 1,581,116 - Shewana3_1369 0.29 -0.0 1,581,439 + -0.3 1,581,683 + Shewana3_1370 0.16 -0.2 1,581,854 - Shewana3_1370 0.25 -0.0 1,582,130 - Shewana3_1370 0.38 -0.5 1,582,136 + Shewana3_1370 0.38 -2.5 1,582,575 - Shewana3_1370 0.60 -0.2 1,582,646 + Shewana3_1370 0.63 -0.8 1,582,750 + Shewana3_1370 0.68 -0.2 1,582,923 - Shewana3_1370 0.77 +1.6 1,582,925 + Shewana3_1370 0.77 -0.0 1,582,933 - Shewana3_1370 0.77 +3.2 1,583,039 + Shewana3_1370 0.82 -0.4 1,583,118 + Shewana3_1370 0.86 +0.0 1,583,118 + Shewana3_1370 0.86 -1.9 1,583,126 - Shewana3_1370 0.87 -0.9 1,583,126 - Shewana3_1370 0.87 -0.5 1,583,126 - Shewana3_1370 0.87 -1.1 1,583,260 + -0.1 1,583,530 - +0.6 1,583,584 + +0.8 1,583,594 + -0.7 1,583,675 + +0.2 1,583,680 + +1.3 1,583,688 - +3.2 1,583,714 + Shewana3_1371 0.12 -0.3 1,583,714 + Shewana3_1371 0.12 -0.2 1,584,066 + Shewana3_1371 0.56 +1.0 1,584,066 + Shewana3_1371 0.56 +0.5 1,584,122 + Shewana3_1371 0.64 +1.0 1,584,192 + Shewana3_1371 0.73 -0.5 1,584,285 + Shewana3_1371 0.84 +2.6 1,584,287 + Shewana3_1371 0.85 +1.8 1,584,392 + +0.0
Or see this region's nucleotide sequence