Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliI and Shewana3_1346 are separated by 11 nucleotides Shewana3_1346 and Shewana3_1347 are separated by 159 nucleotides Shewana3_1347 and fliL are separated by 82 nucleotides fliL and fliM are separated by 40 nucleotides
Shewana3_1345: fliI - flagellum-specific ATP synthase (RefSeq), at 1,558,558 to 1,559,895
fliI
Shewana3_1346: Shewana3_1346 - flagellar export protein FliJ (RefSeq), at 1,559,907 to 1,560,353
_1346
Shewana3_1347: Shewana3_1347 - flagellar hook-length control protein (RefSeq), at 1,560,513 to 1,562,252
_1347
Shewana3_1348: fliL - flagellar basal body-associated protein FliL (RefSeq), at 1,562,335 to 1,562,859
fliL
Shewana3_1349: fliM - flagellar motor switch protein FliM (RefSeq), at 1,562,900 to 1,563,931
fliM
Position (kb)
1560
1561
1562
1563 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 1559.783 kb on + strand at 1559.813 kb on + strand at 1559.844 kb on - strand at 1560.669 kb on - strand at 1560.892 kb on + strand, within Shewana3_1347 at 1561.055 kb on + strand, within Shewana3_1347 at 1561.239 kb on + strand, within Shewana3_1347 at 1561.276 kb on - strand, within Shewana3_1347 at 1561.327 kb on + strand, within Shewana3_1347 at 1561.470 kb on + strand, within Shewana3_1347 at 1561.725 kb on - strand, within Shewana3_1347 at 1561.727 kb on + strand, within Shewana3_1347 at 1561.856 kb on + strand, within Shewana3_1347 at 1562.002 kb on - strand, within Shewana3_1347 at 1562.017 kb on + strand, within Shewana3_1347 at 1562.468 kb on + strand, within fliL at 1562.705 kb on + strand, within fliL at 1563.175 kb on + strand, within fliM at 1563.241 kb on - strand, within fliM
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,559,783 + +1.3 1,559,813 + +5.3 1,559,844 - +2.4 1,560,669 - +4.2 1,560,892 + Shewana3_1347 0.22 +2.9 1,561,055 + Shewana3_1347 0.31 +1.6 1,561,239 + Shewana3_1347 0.42 +3.6 1,561,276 - Shewana3_1347 0.44 +1.6 1,561,327 + Shewana3_1347 0.47 +3.0 1,561,470 + Shewana3_1347 0.55 +2.0 1,561,725 - Shewana3_1347 0.70 -0.0 1,561,727 + Shewana3_1347 0.70 +2.7 1,561,856 + Shewana3_1347 0.77 +1.8 1,562,002 - Shewana3_1347 0.86 +3.0 1,562,017 + Shewana3_1347 0.86 +3.0 1,562,468 + fliL Shewana3_1348 0.25 +1.1 1,562,705 + fliL Shewana3_1348 0.70 +1.5 1,563,175 + fliM Shewana3_1349 0.27 -0.7 1,563,241 - fliM Shewana3_1349 0.33 +1.1
Or see this region's nucleotide sequence