Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliG and fliH overlap by 14 nucleotides fliH and fliI overlap by 32 nucleotides
Shewana3_1343: fliG - flagellar motor switch protein G (RefSeq), at 1,556,594 to 1,557,640
fliG
Shewana3_1344: fliH - flagellar assembly protein H (RefSeq), at 1,557,627 to 1,558,589
fliH
Shewana3_1345: fliI - flagellum-specific ATP synthase (RefSeq), at 1,558,558 to 1,559,895
fliI
Position (kb) 1557
1558
1559 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9
10 at 1556.695 kb on - strand at 1556.947 kb on + strand, within fliG at 1557.112 kb on - strand, within fliG at 1557.127 kb on + strand, within fliG at 1557.128 kb on - strand, within fliG at 1557.225 kb on + strand, within fliG at 1557.238 kb on + strand, within fliG at 1557.637 kb on - strand at 1557.816 kb on - strand, within fliH at 1557.914 kb on + strand, within fliH at 1557.917 kb on - strand, within fliH at 1557.922 kb on - strand, within fliH at 1557.928 kb on + strand, within fliH at 1557.928 kb on + strand, within fliH at 1557.928 kb on + strand, within fliH at 1557.975 kb on + strand, within fliH at 1557.984 kb on - strand, within fliH at 1558.029 kb on + strand, within fliH at 1558.097 kb on + strand, within fliH at 1558.107 kb on - strand, within fliH at 1558.126 kb on + strand, within fliH at 1558.133 kb on + strand, within fliH at 1558.183 kb on + strand, within fliH at 1558.357 kb on + strand, within fliH at 1558.357 kb on + strand, within fliH at 1558.365 kb on - strand, within fliH at 1558.712 kb on - strand, within fliI at 1558.768 kb on + strand, within fliI at 1558.778 kb on - strand, within fliI at 1558.783 kb on - strand, within fliI at 1558.866 kb on - strand, within fliI at 1558.887 kb on + strand, within fliI at 1559.218 kb on + strand, within fliI at 1559.248 kb on + strand, within fliI at 1559.379 kb on + strand, within fliI at 1559.503 kb on + strand, within fliI
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,556,695 - +0.8 1,556,947 + fliG Shewana3_1343 0.34 +1.0 1,557,112 - fliG Shewana3_1343 0.49 +3.2 1,557,127 + fliG Shewana3_1343 0.51 +1.5 1,557,128 - fliG Shewana3_1343 0.51 +1.6 1,557,225 + fliG Shewana3_1343 0.60 +3.8 1,557,238 + fliG Shewana3_1343 0.62 +1.3 1,557,637 - +3.0 1,557,816 - fliH Shewana3_1344 0.20 -0.2 1,557,914 + fliH Shewana3_1344 0.30 +3.9 1,557,917 - fliH Shewana3_1344 0.30 +2.9 1,557,922 - fliH Shewana3_1344 0.31 +0.1 1,557,928 + fliH Shewana3_1344 0.31 +3.2 1,557,928 + fliH Shewana3_1344 0.31 +3.5 1,557,928 + fliH Shewana3_1344 0.31 +2.3 1,557,975 + fliH Shewana3_1344 0.36 +1.9 1,557,984 - fliH Shewana3_1344 0.37 +9.9 1,558,029 + fliH Shewana3_1344 0.42 +1.7 1,558,097 + fliH Shewana3_1344 0.49 +3.4 1,558,107 - fliH Shewana3_1344 0.50 +0.9 1,558,126 + fliH Shewana3_1344 0.52 +1.9 1,558,133 + fliH Shewana3_1344 0.53 +0.2 1,558,183 + fliH Shewana3_1344 0.58 +2.5 1,558,357 + fliH Shewana3_1344 0.76 +3.4 1,558,357 + fliH Shewana3_1344 0.76 +2.8 1,558,365 - fliH Shewana3_1344 0.77 +2.4 1,558,712 - fliI Shewana3_1345 0.12 -0.0 1,558,768 + fliI Shewana3_1345 0.16 +3.4 1,558,778 - fliI Shewana3_1345 0.16 +4.3 1,558,783 - fliI Shewana3_1345 0.17 +3.1 1,558,866 - fliI Shewana3_1345 0.23 +2.1 1,558,887 + fliI Shewana3_1345 0.25 +3.2 1,559,218 + fliI Shewana3_1345 0.49 +3.0 1,559,248 + fliI Shewana3_1345 0.52 +3.2 1,559,379 + fliI Shewana3_1345 0.61 +3.0 1,559,503 + fliI Shewana3_1345 0.71 +3.8
Or see this region's nucleotide sequence