Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1336
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,548,467 | + | Shewana3_1335 | 0.36 | -0.1 | |
1,548,569 | - | Shewana3_1335 | 0.43 | +1.0 | |
1,548,628 | + | Shewana3_1335 | 0.48 | +2.9 | |
1,548,794 | + | Shewana3_1335 | 0.60 | +3.0 | |
1,548,794 | + | Shewana3_1335 | 0.60 | +2.1 | |
1,549,254 | + | +2.2 | |||
1,549,298 | - | +3.2 | |||
1,549,321 | + | +2.3 | |||
1,549,512 | + | Shewana3_1336 | 0.45 | +3.0 | |
1,549,562 | + | Shewana3_1336 | 0.60 | +1.9 | |
1,549,571 | - | Shewana3_1336 | 0.63 | +0.9 | |
1,549,694 | + | +1.1 | |||
1,549,742 | + | fliS | Shewana3_1337 | 0.10 | +4.1 |
1,549,811 | + | fliS | Shewana3_1337 | 0.27 | +7.4 |
1,549,811 | + | fliS | Shewana3_1337 | 0.27 | +4.1 |
1,549,811 | + | fliS | Shewana3_1337 | 0.27 | +4.8 |
1,549,819 | - | fliS | Shewana3_1337 | 0.29 | +2.2 |
1,550,052 | + | fliS | Shewana3_1337 | 0.85 | +0.7 |
1,550,143 | + | -1.0 | |||
1,550,204 | - | -0.2 | |||
1,550,280 | + | -0.8 | |||
1,550,298 | - | +3.6 | |||
1,550,305 | - | +4.6 |
Or see this region's nucleotide sequence