Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1336

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1335 and Shewana3_1336 are separated by 18 nucleotidesShewana3_1336 and fliS are separated by 6 nucleotidesfliS and Shewana3_1338 are separated by 286 nucleotides Shewana3_1335: Shewana3_1335 - flagellar hook-associated 2 domain-containing protein (RefSeq), at 1,547,975 to 1,549,345 _1335 Shewana3_1336: Shewana3_1336 - hypothetical protein (RefSeq), at 1,549,364 to 1,549,693 _1336 Shewana3_1337: fliS - flagellar protein FliS (RefSeq), at 1,549,700 to 1,550,113 fliS Shewana3_1338: Shewana3_1338 - sigma-54 dependent trancsriptional regulator (RefSeq), at 1,550,400 to 1,551,833 _1338 Position (kb) 1549 1550Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 1548.467 kb on + strand, within Shewana3_1335at 1548.569 kb on - strand, within Shewana3_1335at 1548.628 kb on + strand, within Shewana3_1335at 1548.794 kb on + strand, within Shewana3_1335at 1548.794 kb on + strand, within Shewana3_1335at 1549.254 kb on + strandat 1549.298 kb on - strandat 1549.321 kb on + strandat 1549.512 kb on + strand, within Shewana3_1336at 1549.562 kb on + strand, within Shewana3_1336at 1549.571 kb on - strand, within Shewana3_1336at 1549.694 kb on + strandat 1549.742 kb on + strand, within fliSat 1549.811 kb on + strand, within fliSat 1549.811 kb on + strand, within fliSat 1549.811 kb on + strand, within fliSat 1549.819 kb on - strand, within fliSat 1550.052 kb on + strand, within fliSat 1550.143 kb on + strandat 1550.204 kb on - strandat 1550.280 kb on + strandat 1550.298 kb on - strandat 1550.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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1,548,467 + Shewana3_1335 0.36 -0.1
1,548,569 - Shewana3_1335 0.43 +1.0
1,548,628 + Shewana3_1335 0.48 +2.9
1,548,794 + Shewana3_1335 0.60 +3.0
1,548,794 + Shewana3_1335 0.60 +2.1
1,549,254 + +2.2
1,549,298 - +3.2
1,549,321 + +2.3
1,549,512 + Shewana3_1336 0.45 +3.0
1,549,562 + Shewana3_1336 0.60 +1.9
1,549,571 - Shewana3_1336 0.63 +0.9
1,549,694 + +1.1
1,549,742 + fliS Shewana3_1337 0.10 +4.1
1,549,811 + fliS Shewana3_1337 0.27 +7.4
1,549,811 + fliS Shewana3_1337 0.27 +4.1
1,549,811 + fliS Shewana3_1337 0.27 +4.8
1,549,819 - fliS Shewana3_1337 0.29 +2.2
1,550,052 + fliS Shewana3_1337 0.85 +0.7
1,550,143 + -1.0
1,550,204 - -0.2
1,550,280 + -0.8
1,550,298 - +3.6
1,550,305 - +4.6

Or see this region's nucleotide sequence