Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1331
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,543,213 | + | Shewana3_1330 | 0.49 | +3.4 | |
1,543,291 | - | Shewana3_1330 | 0.53 | +2.6 | |
1,543,695 | - | Shewana3_1330 | 0.74 | -0.0 | |
1,543,774 | + | Shewana3_1330 | 0.78 | +2.9 | |
1,543,895 | - | Shewana3_1330 | 0.84 | +1.2 | |
1,544,221 | - | -0.0 | |||
1,544,294 | + | +1.8 | |||
1,544,376 | + | flgL | Shewana3_1331 | 0.14 | +5.1 |
1,544,555 | - | flgL | Shewana3_1331 | 0.29 | -0.5 |
1,544,697 | + | flgL | Shewana3_1331 | 0.40 | +0.7 |
1,544,734 | + | flgL | Shewana3_1331 | 0.43 | +0.5 |
1,545,049 | + | flgL | Shewana3_1331 | 0.69 | +1.6 |
1,545,135 | + | flgL | Shewana3_1331 | 0.76 | +2.0 |
1,545,584 | + | +1.0 | |||
1,545,601 | + | +0.5 | |||
1,545,629 | + | Shewana3_1332 | 0.13 | +0.3 | |
1,545,700 | + | Shewana3_1332 | 0.22 | +1.0 | |
1,545,700 | + | Shewana3_1332 | 0.22 | +0.7 | |
1,545,713 | - | Shewana3_1332 | 0.23 | +0.6 | |
1,546,130 | - | Shewana3_1332 | 0.74 | +2.0 | |
1,546,221 | + | Shewana3_1332 | 0.85 | +0.6 | |
1,546,244 | - | Shewana3_1332 | 0.88 | +2.2 |
Or see this region's nucleotide sequence